Solyc11g017140.1 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc11g017140.1 T129393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.817 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.817 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc11g017140.1.1 C2H2 ZF 320 342
Solyc11g017140.1.1 C2H2 ZF 341 372

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I
SapurV1A.1016s0050 Salix purpurea SapurV1A.1016s0050 I
orange1.1g041818m.g Citrus sinensis orange1.1g041818m.g N