Afo_R002092 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R002092 T132756_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF76
M04398_2.00 		Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX 		0.793 0.932
ZNF76
M08278_2.00 		Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV		 ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE 		0.793 0.932
ZNF76
M08856_2.00 		Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT		 Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C 		0.793 0.932
ZNF76
M04399_2.00 		Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX 		0.793 0.932
ZNF143
M02899_2.00 		Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR		 SELEX
Jolma et al.(2013)
ZNF143_1 		0.766 0.845
ZNF143
M07931_2.00 		Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY		 ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford 		0.766 0.845
ZNF143
M08910_2.00 		Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A 		0.766 0.845
Zfp143
M09010_2.00 		Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A 		0.766 0.845
ZNF143
M09510_2.00 		Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN		 Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600 		0.766 0.845
ZNF143
M10247_2.00 		Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN		 Transfac
Matys et al.(2006)
V$STAF_01 		0.766 0.845
ZNF143
M10248_2.00 		Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK		 Transfac
Matys et al.(2006)
V$STAF_02 		0.766 0.845
ZNF143
M10249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STAF_Q4_01 		0.766 0.845
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R002092 C2H2 ZF 166 190
Afo_R002092 C2H2 ZF 196 220
Afo_R002092 C2H2 ZF 226 250
Afo_R002092 C2H2 ZF 256 280
Afo_R002092 C2H2 ZF 286 310
Afo_R002092 C2H2 ZF 316 340
Afo_R002092 C2H2 ZF 346 369

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE02778 Caenorhabditis remanei CRE02778 N
CRE03542 Caenorhabditis remanei CRE03542 N
CRE06559 Caenorhabditis remanei CRE06559 N
CRE08623 Caenorhabditis remanei CRE08623 N
CRE11381 Caenorhabditis remanei CRE11381 N
CRE13126 Caenorhabditis remanei CRE13126 N
CRE13649 Caenorhabditis remanei CRE13649 N
CRE15018 Caenorhabditis remanei CRE15018 N
CRE15923 Caenorhabditis remanei CRE15923 N
CRE15946 Caenorhabditis remanei CRE15946 N
CRE16375 Caenorhabditis remanei CRE16375 N
CRE23042 Caenorhabditis remanei CRE23042 N
CRE23050 Caenorhabditis remanei CRE23050 N
CRE27721 Caenorhabditis remanei CRE27721 N
CRE29174 Caenorhabditis remanei CRE29174 N