Alligator_sinensis_CCG012491.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG012491.1 T133294_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG012491.1 C2H2 ZF 244 266
Alligator_sinensis_CCG012491.1 C2H2 ZF 272 294
Alligator_sinensis_CCG012491.1 C2H2 ZF 300 322
Alligator_sinensis_CCG012491.1 C2H2 ZF 328 350
Alligator_sinensis_CCG012491.1 C2H2 ZF 354 378
Alligator_sinensis_CCG012491.1 C2H2 ZF 384 406
Alligator_sinensis_CCG012491.1 C2H2 ZF 412 434
Alligator_sinensis_CCG012491.1 C2H2 ZF 440 462
Alligator_sinensis_CCG012491.1 C2H2 ZF 468 490
Alligator_sinensis_CCG012491.1 C2H2 ZF 496 518
Alligator_sinensis_CCG012491.1 C2H2 ZF 524 547

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N
Carubv10008999m.g Capsella rubella Carubv10008999m.g N
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N
gene14438-v1.0-hybrid Fragaria vesca gene14438-v1.0-hybrid N
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N
mgf022906m Mimulus guttatus mgf022906m N
mgf008315m Mimulus guttatus mgf008315m N
Cucsa.308180 Cucumis sativus Cucsa.308180 N
Cucsa.055340 Cucumis sativus Cucsa.055340 N
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N
cassava20989.m1 Manihot esculenta cassava20989.m1 N
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N
PK02707.1 Cannabis sativa PK02707.1 N
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N
Lus10022418.g Linum usitatissimum Lus10022418.g N
Lus10009717.g Linum usitatissimum Lus10009717.g N
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N
GLYMA11G10170 Glycine max GLYMA11G10170 N
SCL3 Populus trichocarpa POPTR_0009s05330 N
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N
MTR_5g009080 Medicago truncatula MTR_5g009080 N
MTR_4g076140 Medicago truncatula MTR_4g076140 N
GLYMA12G02490 Glycine max GLYMA12G02490 N
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N
GLYMA11G01850 Glycine max GLYMA11G01850 N
GLYMA01G43620 Glycine max GLYMA01G43620 N
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N
Bra018848 Brassica rapa Bra018848 N
Bra014251 Brassica rapa Bra014251 N
Bo6g022200 Brassica oleracea Bo6g022200 N
Bo5g078760 Brassica oleracea Bo5g078760 N
Bo3g179450 Brassica oleracea Bo3g179450 N
Ca_11133 Cicer arietinum Ca_11133 N
30131.m007244 Ricinus communis 30131.m007244 N
30024.m001746 Ricinus communis 30024.m001746 N
Pm029840 Prunus mume Pm029840 N
Pm016466 Prunus mume Pm016466 N
Pm012190 Prunus mume Pm012190 N
Cla020893 Citrullus lanatus Cla020893 N
Cla006433 Citrullus lanatus Cla006433 N
Ca_27441 Cicer arietinum Ca_27441 N
SCL3 Arabidopsis thaliana AT1G50420 N
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N
SCL3 Vitis vinifera VIT_06s0009g02390 N
TCM_042392 Theobroma cacao TCM_042392 N
TCM_040833 Theobroma cacao TCM_040833 N
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N