Brh_R005520 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R005520 T133551_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF143
M02899_2.00 		Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR		 SELEX
Jolma et al.(2013)
ZNF143_1 		0.824 0.981
ZNF143
M07931_2.00 		Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY		 ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford 		0.824 0.981
ZNF143
M08910_2.00 		Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A 		0.824 0.981
Zfp143
M09010_2.00 		Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A 		0.824 0.981
ZNF143
M09510_2.00 		Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN		 Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600 		0.824 0.981
ZNF143
M10247_2.00 		Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN		 Transfac
Matys et al.(2006)
V$STAF_01 		0.824 0.981
ZNF143
M10248_2.00 		Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK		 Transfac
Matys et al.(2006)
V$STAF_02 		0.824 0.981
ZNF143
M10249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STAF_Q4_01 		0.824 0.981
ZNF76
M04398_2.00 		Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX 		0.765 0.839
ZNF76
M08278_2.00 		Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV		 ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE 		0.765 0.839
ZNF76
M08856_2.00 		Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT		 Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C 		0.765 0.839
ZNF76
M04399_2.00 		Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX 		0.765 0.839
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R005520 C2H2 ZF 24 48
Brh_R005520 C2H2 ZF 54 78
Brh_R005520 C2H2 ZF 84 108
Brh_R005520 C2H2 ZF 114 138
Brh_R005520 C2H2 ZF 144 168
Brh_R005520 C2H2 ZF 174 198
Brh_R005520 C2H2 ZF 204 227

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0146300 Oryza glaberrima ORGLA03G0146300 N
Pavir.J20659 Panicum virgatum Pavir.J20659 N
Pavir.Da01921 Panicum virgatum Pavir.Da01921 N
Traes_4DL_73DC40D7B Triticum aestivum Traes_4DL_73DC40D7B N
Traes_4BL_DAFEC95DD Triticum aestivum Traes_4BL_DAFEC95DD N
Traes_4AS_6EDD5ACF7 Triticum aestivum Traes_4AS_6EDD5ACF7 N
Si036527m.g Setaria italica Si036527m.g N
Si006667m.g Setaria italica Si006667m.g N
Sb01g037050 Sorghum bicolor Sb01g037050 N
TGA2.2 Oryza sativa OS03G0318600 N
ORUFI03G15900 Oryza rufipogon ORUFI03G15900 N
BRADI1G43900 Brachypodium distachyon BRADI1G43900 N
OPUNC03G14770 Oryza punctata OPUNC03G14770 N
ONIVA03G16290 Oryza nivara ONIVA03G16290 N
OMERI03G13930 Oryza meridionalis OMERI03G13930 N
OLONG_001724 Oryza longistaminata OLONG_001724 N
OGLUM03G15460 Oryza glumaepatula OGLUM03G15460 N
OBART03G15290 Oryza barthii OBART03G15290 N
MLOC_64008 Hordeum vulgare MLOC_64008 N
GRMZM2G174284 Zea mays GRMZM2G174284 N
GRMZM2G056099 Zea mays GRMZM2G056099 N
BRADI1G64060 Brachypodium distachyon BRADI1G64060 N