Gfo_R012611 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012611 T135846_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF521
M10318_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF521_03 		0.778 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012611 C2H2 ZF 107 129
Gfo_R012611 C2H2 ZF 135 157
Gfo_R012611 C2H2 ZF 163 185
Gfo_R012611 C2H2 ZF 191 213
Gfo_R012611 C2H2 ZF 235 258
Gfo_R012611 C2H2 ZF 270 293
Gfo_R012611 C2H2 ZF 300 321
Gfo_R012611 C2H2 ZF 426 449
Gfo_R012611 C2H2 ZF 466 489
Gfo_R012611 C2H2 ZF 502 525
Gfo_R012611 C2H2 ZF 549 574
Gfo_R012611 C2H2 ZF 623 645
Gfo_R012611 C2H2 ZF 653 675
Gfo_R012611 C2H2 ZF 683 706
Gfo_R012611 C2H2 ZF 711 734
Gfo_R012611 C2H2 ZF 741 764
Gfo_R012611 C2H2 ZF 798 821
Gfo_R012611 C2H2 ZF 875 898
Gfo_R012611 C2H2 ZF 919 941
Gfo_R012611 C2H2 ZF 948 970
Gfo_R012611 C2H2 ZF 1214 1236
Gfo_R012611 C2H2 ZF 1245 1268

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000014429 Astyanax mexicanus ENSAMXG00000014429 N
hes2.2 Gasterosteus aculeatus ENSGACG00000006470 N
ENSGMOG00000015330 Gadus morhua ENSGMOG00000015330 N
ENSONIG00000002077 Oreochromis niloticus ENSONIG00000002077 N
hes2.2 Oryzias latipes ENSORLG00000004275 N
ENSPFOG00000011221 Poecilia formosa ENSPFOG00000011221 N
HES2 Takifugu rubripes ENSTRUG00000000980 N
HES2 Takifugu rubripes ENSTRUG00000015206 N
ENSXMAG00000018649 Xiphophorus maculatus ENSXMAG00000018649 N