Pm022201 (Prunus mume)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pm022201 T136822_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.956
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm022201 C2H2 ZF 362 384
Pm022201 C2H2 ZF 383 414

Links

Other C2H2 ZF family TFs
Other Prunus mume TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
Ca_02285 Cicer arietinum Ca_02285 I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.000
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.000
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.000
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.000
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.000
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.000
30054.m000786 Ricinus communis 30054.m000786 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
Cla016403 Citrullus lanatus Cla016403 I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Ca_24009 Cicer arietinum Ca_24009 I 0.000
Ca_12825 Cicer arietinum Ca_12825 I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
MDP0000248863 Malus domestica MDP0000248863 I 0.000
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.000
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.000
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.000
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.000
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.000
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.000
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.000
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.000
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.000
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.000
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.000
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
Bra013279 Brassica rapa Bra013279 I 0.000
Bra013278 Brassica rapa Bra013278 I 0.000
Bra013277 Brassica rapa Bra013277 I 0.000
Bra012623 Brassica rapa Bra012623 I 0.000
Bo7g105690 Brassica oleracea Bo7g105690 I 0.000
Bo1g019180 Brassica oleracea Bo1g019180 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.000
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.000
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.000
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.000
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.000
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.000
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000