Ciclev10000850m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10000850m.g T142753_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000850m C2H2 ZF 358 380
Ciclev10000850m C2H2 ZF 379 410

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.803
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.793
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.803
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.803
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.803
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.803
mgf000060m Mimulus guttatus mgf000060m I 0.803
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.797
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.803
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.784
Pm022201 Prunus mume Pm022201 I 0.803
Cla016623 Citrullus lanatus Cla016623 I 0.797
Ca_04300 Cicer arietinum Ca_04300 I 0.803
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.803
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.779
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.779
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.779
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.779
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.793
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.779
MDP0000141403 Malus domestica MDP0000141403 I 0.803
MDP0000199559 Malus domestica MDP0000199559 I 0.803
MDP0000453148 Malus domestica MDP0000453148 I 0.769
MDP0000551046 Malus domestica MDP0000551046 I 0.803
MDP0000807856 Malus domestica MDP0000807856 I 0.803
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.827
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.803
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.803
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.779
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.774
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.774
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.803
PK23301.1 Cannabis sativa PK23301.1 I 0.803
OBART01G38810 Oryza barthii OBART01G38810 I 0.779
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.779
Bo8g027000 Brassica oleracea Bo8g027000 I 0.803
Bra040971 Brassica rapa Bra040971 I 0.779
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.779
F775_04088 Aegilops tauschii F775_04088 I 0.779
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.803
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.774
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.774
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.774
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.779
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.779
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.803
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.779
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.779
OB01G47470 Oryza brachyantha OB01G47470 I 0.779
TCM_036719 Theobroma cacao TCM_036719 I 0.793
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.779
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.779
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.779
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.779
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.779
OS01G0871200 Oryza sativa OS01G0871200 I 0.779
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.793
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.774
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.774
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.803
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.779
Si001053m.g Setaria italica Si001053m.g I 0.779
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.774
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.793