CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ia00191
(
Panicum virgatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pavir.Ia00191
T143375_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.763
0.791
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.763
0.791
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia00191.1.p
C2H2 ZF
227
249
YTCRRCNVKRFSVLADLRTHEKH
Pavir.Ia00191.1.p
C2H2 ZF
249
275
HCGRDRWVCSCGTSFSRKDKLFGHVAA
Links
Other
C2H2 ZF
family TFs
Other
Panicum virgatum
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.000
BGIOSGA030113
Oryza indica
BGIOSGA030113
I
0.000
PDK_20s1519811g001
Phoenix dactylifera
PDK_20s1519811g001
I
0.000
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.000
PK10616.1
Cannabis sativa
PK10616.1
I
0.000
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.000
Pavir.J39511
Panicum virgatum
Pavir.J39511
I
0.000
Pavir.Ha01933
Panicum virgatum
Pavir.Ha01933
I
0.000
Pavir.Cb02194
Panicum virgatum
Pavir.Cb02194
I
0.000
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.000
Gorai.005G003900
Gossypium raimondii
Gorai.005G003900
I
0.000
TCM_019689
Theobroma cacao
TCM_019689
I
0.000
Si025181m.g
Setaria italica
Si025181m.g
I
0.000
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.000
ORGLA09G0026100
Oryza glaberrima
ORGLA09G0026100
I
0.000
ONIVA09G03360
Oryza nivara
ONIVA09G03360
I
0.000
LPERR11G00960
Leersia perrieri
LPERR11G00960
I
0.000
MTR_2g075680
Medicago truncatula
MTR_2g075680
I
0.000
OLONG_002978
Oryza longistaminata
OLONG_002978
I
0.000
LPERR12G01070
Leersia perrieri
LPERR12G01070
I
0.000
LPERR08G11030
Leersia perrieri
LPERR08G11030
I
0.000
OGLUM11G00850
Oryza glumaepatula
OGLUM11G00850
I
0.000
BRADI4G44350
Brachypodium distachyon
BRADI4G44350
I
0.000
Bra028918
Brassica rapa
Bra028918
I
0.000
F775_23346
Aegilops tauschii
F775_23346
N
0.000
BRADI4G44370
Brachypodium distachyon
BRADI4G44370
N
0.000
Si010832m.g
Setaria italica
Si010832m.g
N
0.000
TRIUR3_24639
Triticum urartu
TRIUR3_24639
N
0.000
Traes_5DL_09F1F8F79
Triticum aestivum
Traes_5DL_09F1F8F79
N
0.000
Traes_5BL_175E7FC38
Triticum aestivum
Traes_5BL_175E7FC38
N
0.000
MLOC_68369
Hordeum vulgare
MLOC_68369
N
0.000
Si027360m.g
Setaria italica
Si027360m.g
N
0.000
BGIOSGA036757
Oryza indica
BGIOSGA036757
N
0.000
BGIOSGA034613
Oryza indica
BGIOSGA034613
N
0.000
Si019098m.g
Setaria italica
Si019098m.g
N
0.000
Si010764m.g
Setaria italica
Si010764m.g
N
0.000
OBART11G01100
Oryza barthii
OBART11G01100
N
0.000
Sb08g002570
Sorghum bicolor
Sb08g002570
N
0.000
Sb05g001180
Sorghum bicolor
Sb05g001180
N
0.000
OS12G0116600
Oryza sativa
OS12G0116600
N
0.000
OS11G0117400
Oryza sativa
OS11G0117400
N
0.000
ORGLA12G0007500
Oryza glaberrima
ORGLA12G0007500
N
0.000
ORGLA11G0201900
Oryza glaberrima
ORGLA11G0201900
N
0.000
OPUNC12G00970
Oryza punctata
OPUNC12G00970
N
0.000
OPUNC11G00970
Oryza punctata
OPUNC11G00970
N
0.000
ONIVA11G01230
Oryza nivara
ONIVA11G01230
N
0.000
ONIVA11G01050
Oryza nivara
ONIVA11G01050
N
0.000
OGLUM12G01400
Oryza glumaepatula
OGLUM12G01400
N
0.000
OMERI11G01520
Oryza meridionalis
OMERI11G01520
N
0.000