Pavir.Ia00191 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ia00191 T143375_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.763 0.791
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.763 0.791
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00191.1.p C2H2 ZF 227 249
Pavir.Ia00191.1.p C2H2 ZF 249 275

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WRKY38 Arabidopsis thaliana AT5G22570 D 0.000
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.000
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
PK10616.1 Cannabis sativa PK10616.1 I 0.000
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.000
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.000
TCM_019689 Theobroma cacao TCM_019689 I 0.000
Si025181m.g Setaria italica Si025181m.g I 0.000
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.000
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I 0.000
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.000
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.000
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.000
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.000
LPERR12G01070 Leersia perrieri LPERR12G01070 I 0.000
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.000
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I 0.000
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I 0.000
Bra028918 Brassica rapa Bra028918 I 0.000
F775_23346 Aegilops tauschii F775_23346 N 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
Si010832m.g Setaria italica Si010832m.g N 0.000
TRIUR3_24639 Triticum urartu TRIUR3_24639 N 0.000
Traes_5DL_09F1F8F79 Triticum aestivum Traes_5DL_09F1F8F79 N 0.000
Traes_5BL_175E7FC38 Triticum aestivum Traes_5BL_175E7FC38 N 0.000
MLOC_68369 Hordeum vulgare MLOC_68369 N 0.000
Si027360m.g Setaria italica Si027360m.g N 0.000
BGIOSGA036757 Oryza indica BGIOSGA036757 N 0.000
BGIOSGA034613 Oryza indica BGIOSGA034613 N 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
OBART11G01100 Oryza barthii OBART11G01100 N 0.000
Sb08g002570 Sorghum bicolor Sb08g002570 N 0.000
Sb05g001180 Sorghum bicolor Sb05g001180 N 0.000
OS12G0116600 Oryza sativa OS12G0116600 N 0.000
OS11G0117400 Oryza sativa OS11G0117400 N 0.000
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N 0.000
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N 0.000
OPUNC12G00970 Oryza punctata OPUNC12G00970 N 0.000
OPUNC11G00970 Oryza punctata OPUNC11G00970 N 0.000
ONIVA11G01230 Oryza nivara ONIVA11G01230 N 0.000
ONIVA11G01050 Oryza nivara ONIVA11G01050 N 0.000
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N 0.000
OMERI11G01520 Oryza meridionalis OMERI11G01520 N 0.000