PDK_20s1338731g001 (Phoenix dactylifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PDK_20s1338731g001 T146560_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.768 0.844
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.768 0.844
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1338731g001 C2H2 ZF 335 361
PDK_20s1338731g001 C2H2 ZF 357 387

Links

Other C2H2 ZF family TFs
Other Phoenix dactylifera TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.768
Cla016623 Citrullus lanatus Cla016623 I 0.762
PK23301.1 Cannabis sativa PK23301.1 I 0.768
Pm022201 Prunus mume Pm022201 I 0.768
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.768
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.762
mgf000060m Mimulus guttatus mgf000060m I 0.768
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.774
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.768
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.768
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.768
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.768
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.768
MDP0000141403 Malus domestica MDP0000141403 I 0.768
MDP0000199559 Malus domestica MDP0000199559 I 0.768
MDP0000551046 Malus domestica MDP0000551046 I 0.768
MDP0000807856 Malus domestica MDP0000807856 I 0.768
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.763
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.763
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.768
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.768
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.768
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.768
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.768
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.774
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.763
Bo8g027000 Brassica oleracea Bo8g027000 I 0.768
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.768
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.768
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.768
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.768
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.768
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.763
OB03G47410 Oryza brachyantha OB03G47410 I 0.763
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.768
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.768
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.768
Ca_04300 Cicer arietinum Ca_04300 I 0.768
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.812
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.812
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.782
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.782
Si036555m.g Setaria italica Si036555m.g I 0.763
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.768
TCM_036719 Theobroma cacao TCM_036719 I 0.768
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.768
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.762
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.762