augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 (Meloidogyne floridensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 T152346_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.786 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0-mRNA-1 C2H2 ZF 411 433
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0-mRNA-1 C2H2 ZF 439 463
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0-mRNA-1 C2H2 ZF 469 490

Links

Other C2H2 ZF family TFs
Other Meloidogyne floridensis TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
sptf-3 Caenorhabditis elegans WBGene00012735 D 0.786
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.798
EVEC_0000041101 Enterobius vermicularis EVEC_0000041101 I 0.806
GPLIN_000570600 Globodera pallida GPLIN_000570600 I 0.774
GPUH_0001030801 Gongylonema pulchrum GPUH_0001030801 I 0.790
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.790
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.790
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.790
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.770
L889_g32073 Steinernema feltiae L889_g32073 I 0.770
L892_g17070 Steinernema scapterisci L892_g17070 I 0.770
L893_g2044 Steinernema glaseri L893_g2044 I 0.770
L898_g7955 Steinernema monticolum L898_g7955 I 0.770
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.778
nAv.1.0.1.g06936 Acanthocheilonema viteae nAv.1.0.1.g06936 I 0.786
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.790
nDi.2.2.2.g02202 Dirofilaria immitis nDi.2.2.2.g02202 I 0.786
NECAME_13378 Necator americanus NECAME_13378 I 0.790
nLs.2.1.2.g07946 Litomosoides sigmodontis nLs.2.1.2.g07946 I 0.786
nOo.2.0.1.g04030 Onchocerca ochengi nOo.2.0.1.g04030 I 0.760
nOo.2.0.1.g09582 Onchocerca ochengi nOo.2.0.1.g09582 I 0.786
RSKR_0000732300 Rhabditophanes kr3021 RSKR_0000732300 I 0.760
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.763
SMUV_0000007001 Syphacia muris SMUV_0000007001 I 0.806
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.790
CBG20386 Caenorhabditis briggsae CBG20386 I 0.786
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.757
CRE28577 Caenorhabditis remanei CRE28577 I 0.786
LOAG_01580 Loa loa LOAG_01580 I 0.786
SMAR004952 Strigamia maritima SMAR004952 I 0.766
WBGene00237583 Onchocerca volvulus WBGene00237583 I 0.786
WBGene00237584 Onchocerca volvulus WBGene00237584 I 0.760
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.757
e_gw.339.61.1 Branchiostoma floridae e_gw.339.61.1 I 0.759
estExt_fgenesh2_pg.C_1820063 Branchiostoma floridae estExt_fgenesh2_pg.C_1820063 I 0.759
BGLB011938 Biomphalaria glabrata BGLB011938 I 0.763
EEL_0000517301 Elaeophora elaphi EEL_0000517301 I 0.786
ALUE_0000441701 Ascaris lumbricoides ALUE_0000441701 I 0.790
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.790
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.790
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.790
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.790
ASU_13052 Ascaris suum ASU_13052 I 0.790
BTMF_0000199301 Brugia timori BTMF_0000199301 I 0.786
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.765
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.806
Bm6499 Brugia malayi Bm6499 I 0.786