D917_04158 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_04158 T152863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp4
M01862_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2014)
pTH4998 		0.763 0.783
Sp4
M00133_2.00 		Mus musculus
HMCGCCCMYN
NRKGGGCGKD		 PBM
Badis et al.(2009)
Sp4_1011 		0.763 0.783
Sp4
M05859_2.00 		Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH		 SMiLE-seq
Isakova et al.(2017)
SP4 		0.763 0.783
Sp4
M08975_2.00 		Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV		 Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B 		0.763 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_04158 C2H2 ZF 1050 1074
D917_04158 C2H2 ZF 1080 1104
D917_04158 C2H2 ZF 1110 1132

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla012346 Citrullus lanatus Cla012346 N 0.000
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.000
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.000
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.000
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.000
mgf012242m Mimulus guttatus mgf012242m N 0.000
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.000
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.000
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.000
30073.m002204 Ricinus communis 30073.m002204 N 0.000
Pm002956 Prunus mume Pm002956 N 0.000
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.000
Ca_09530 Cicer arietinum Ca_09530 N 0.000
SCR Vitis vinifera VIT_08s0056g00050 N 0.000
TRIUR3_28106 Triticum urartu TRIUR3_28106 N 0.000
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.000
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.000
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.000
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.000
Traes_2AS_455BD2CA1 Triticum aestivum Traes_2AS_455BD2CA1 N 0.000
TCM_017746 Theobroma cacao TCM_017746 N 0.000
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.000
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.000
PK22310.1 Cannabis sativa PK22310.1 N 0.000
PK17372.1 Cannabis sativa PK17372.1 N 0.000
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.000
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.000
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.000
Pavir.J23622 Panicum virgatum Pavir.J23622 N 0.000
Pavir.J21588 Panicum virgatum Pavir.J21588 N 0.000
Pavir.J19041 Panicum virgatum Pavir.J19041 N 0.000
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.000
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N 0.000
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.000
MDP0000397638 Malus domestica MDP0000397638 N 0.000
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.000
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.000
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.000
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.000
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.000
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.000
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.000
OB07G24850 Oryza brachyantha OB07G24850 N 0.000
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.000
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.000
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.000
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.000
LPERR11G01210 Leersia perrieri LPERR11G01210 N 0.000
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.000
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.000
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.000
OBART11G01460 Oryza barthii OBART11G01460 N 0.000
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.000
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.000
F775_14336 Aegilops tauschii F775_14336 N 0.000
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N 0.000
Bra007056 Brassica rapa Bra007056 N 0.000
Bo8g083500 Brassica oleracea Bo8g083500 N 0.000
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.000
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.000
SCR Arabidopsis thaliana AT3G54220 N 0.000
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.000
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.000
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.000
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.000
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.000
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.000
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.000
SCR2 Oryza sativa OS12G0122000 N 0.000
SCR1 Oryza sativa OS11G0124300 N 0.000
OS07G0567700 Oryza sativa OS07G0567700 N 0.000
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.000
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.000
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N 0.000
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N 0.000
OPUNC11G01240 Oryza punctata OPUNC11G01240 N 0.000
ONIVA11G01600 Oryza nivara ONIVA11G01600 N 0.000
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.000
OGLUM12G01020 Oryza glumaepatula OGLUM12G01020 N 0.000
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.000
OBART12G01190 Oryza barthii OBART12G01190 N 0.000