GPLIN_000816800 (Globodera pallida)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 GPLIN_000816800 T153579_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000816800 C2H2 ZF 628 650
GPLIN_000816800 C2H2 ZF 656 679
GPLIN_000816800 C2H2 ZF 685 707

Links

Other C2H2 ZF family TFs
Other Globodera pallida TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N
Cucsa.248920 Cucumis sativus Cucsa.248920 N
mgf003626m Mimulus guttatus mgf003626m N
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N
Carubv10001054m.g Capsella rubella Carubv10001054m.g N
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N
MDP0000235160 Malus domestica MDP0000235160 N
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N
PK06863.1 Cannabis sativa PK06863.1 N
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N
SIGD Arabidopsis thaliana AT5G13730 N
Bo2g011520 Brassica oleracea Bo2g011520 N
Bo9g166510 Brassica oleracea Bo9g166510 N
Bra023430 Brassica rapa Bra023430 N
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N
MTR_3g033420 Medicago truncatula MTR_3g033420 N
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N
SIG4 Populus trichocarpa POPTR_0009s06210 N
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N
SIG4 Arabidopsis lyrata scaffold_601382.1 N
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N
SIG4 Vitis vinifera VIT_13s0064g00190 N
Ca_22857 Cicer arietinum Ca_22857 N
Cla017559 Citrullus lanatus Cla017559 N
Pm016510 Prunus mume Pm016510 N
29864.m001444 Ricinus communis 29864.m001444 N