NBR_0001206901 (Nippostrongylus brasiliensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 NBR_0001206901 T155094_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.820 0.928
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.766 0.768
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.766 0.768
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.766 0.768
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.766 0.768
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.766 0.768
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.766 0.768
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.766 0.768
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.766 0.768
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.766 0.768
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.766 0.768
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.766 0.768
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.766 0.768
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.766 0.768
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.766 0.768
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.766 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0001206901-mRNA-1 C2H2 ZF 234 256
NBR_0001206901-mRNA-1 C2H2 ZF 262 286
NBR_0001206901-mRNA-1 C2H2 ZF 292 314

Links

Other C2H2 ZF family TFs
Other Nippostrongylus brasiliensis TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF2 Arabidopsis thaliana AT1G45249 D 0.000
ABF1 Arabidopsis thaliana AT1G49720 D 0.000
ABF4 Arabidopsis thaliana AT3G19290 D 0.000
ABF3 Arabidopsis thaliana AT4G34000 D 0.000
OS08G0471950 Oryza sativa OS08G0471950 D 0.000
PK18009.1 Cannabis sativa PK18009.1 D 0.000
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.000
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.000
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.000
Bo1g007700 Brassica oleracea Bo1g007700 I 0.000
Bo1g114840 Brassica oleracea Bo1g114840 I 0.000
Bo3g073080 Brassica oleracea Bo3g073080 I 0.000
Bo5g115300 Brassica oleracea Bo5g115300 I 0.000
Bo6g006970 Brassica oleracea Bo6g006970 I 0.000
Bo6g018480 Brassica oleracea Bo6g018480 I 0.000
Bra011485 Brassica rapa Bra011485 I 0.000
Bra022409 Brassica rapa Bra022409 I 0.000
Bra037533 Brassica rapa Bra037533 I 0.000
Bra040260 Brassica rapa Bra040260 I 0.000
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.000
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.000
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.000
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.000
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.000
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.000
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.000
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.000
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.000
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.000
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.000
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.000
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.000
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.000
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.000
OB02G40680 Oryza brachyantha OB02G40680 I 0.000
OB06G16510 Oryza brachyantha OB06G16510 I 0.000
OB09G19140 Oryza brachyantha OB09G19140 I 0.000
OBART01G37980 Oryza barthii OBART01G37980 I 0.000
OBART06G07070 Oryza barthii OBART06G07070 I 0.000
OBART08G17810 Oryza barthii OBART08G17810 I 0.000
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.000
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.000
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.000
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.000
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.000
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.000
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.000
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.000
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.000
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.000
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.000
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.000
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.000
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.000
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.000
OS09G0456200 Oryza sativa OS09G0456200 I 0.000
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.000
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.000
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.000
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.000
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.000
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.000
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.000
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.000
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.000
Si013904m.g Setaria italica Si013904m.g I 0.000
Si030114m.g Setaria italica Si030114m.g I 0.000
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.000
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.000
TCM_007074 Theobroma cacao TCM_007074 I 0.000
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.000
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.000
Ca_06458 Cicer arietinum Ca_06458 I 0.000
Cla016272 Citrullus lanatus Cla016272 I 0.000
Pm021430 Prunus mume Pm021430 I 0.000
29801.m003176 Ricinus communis 29801.m003176 I 0.000
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.000
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.000
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.000
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.000
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.000
mgf002047m Mimulus guttatus mgf002047m I 0.000
mgf007524m Mimulus guttatus mgf007524m I 0.000
mgf014602m Mimulus guttatus mgf014602m I 0.000
mgf015092m Mimulus guttatus mgf015092m I 0.000
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I 0.000
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.000
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.000
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.000
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.000
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.000
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.000
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.000
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.000
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.000
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.000
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.000
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.000
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.000
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.000
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.000
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.000
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.000
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.000
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.000
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.000
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.000
MDP0000248567 Malus domestica MDP0000248567 I 0.000
MDP0000296303 Malus domestica MDP0000296303 I 0.000
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.000
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.000
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.000
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.000
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.000
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.000
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.000
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.000
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.000
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.000
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.000
GLYMA02G14880 Glycine max GLYMA02G14880 N 0.000
Traes_5DL_895AA6D35 Triticum aestivum Traes_5DL_895AA6D35 N 0.000