nLs.2.1.2.g09672 (Litomosoides sigmodontis)
C2HC ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01530 (zf-C2HC) IPR002515 nLs.2.1.2.g09672 T159658_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-11
M00650_2.00 		Caenorhabditis elegans
VAAGTTTN
NAAACTTB		 PBM
Narasimhan et al.(2015)
pTH9925 		0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t09672-RA C2HC ZF 89 116
nLs.2.1.2.t09672-RA C2HC ZF 135 163

Links

Other C2HC ZF family TFs
Other Litomosoides sigmodontis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G140901 Zea mays GRMZM2G140901 I 0.000
GRMZM5G857701 Zea mays GRMZM5G857701 I 0.000
LPERR02G30240 Leersia perrieri LPERR02G30240 I 0.000
OGLUM02G38020 Oryza glumaepatula OGLUM02G38020 I 0.000
Sb04g036640 Sorghum bicolor Sb04g036640 I 0.000
Si017967m.g Setaria italica Si017967m.g I 0.000
Traes_6BL_D00F04562 Triticum aestivum Traes_6BL_D00F04562 I 0.000
Pavir.Aa00144 Panicum virgatum Pavir.Aa00144 I 0.000
Pavir.J34679 Panicum virgatum Pavir.J34679 I 0.000
BGIOSGA007071 Oryza indica BGIOSGA007071 N 0.000
BGIOSGA009257 Oryza indica BGIOSGA009257 N 0.000
BGIOSGA016756 Oryza indica BGIOSGA016756 N 0.000
BGIOSGA027481 Oryza indica BGIOSGA027481 N 0.000
BRADI3G54817 Brachypodium distachyon BRADI3G54817 N 0.000
BRADI5G15587 Brachypodium distachyon BRADI5G15587 N 0.000
F775_08585 Aegilops tauschii F775_08585 N 0.000
F775_17109 Aegilops tauschii F775_17109 N 0.000
F775_18200 Aegilops tauschii F775_18200 N 0.000
GLYMA10G04350 Glycine max GLYMA10G04350 N 0.000
GLYMA13G18620 Glycine max GLYMA13G18620 N 0.000
GLYMA19G34881 Glycine max GLYMA19G34881 N 0.000
GRMZM2G043813 Zea mays GRMZM2G043813 N 0.000
GRMZM2G062009 Zea mays GRMZM2G062009 N 0.000
GRMZM2G081930 Zea mays GRMZM2G081930 N 0.000
GRMZM2G156977 Zea mays GRMZM2G156977 N 0.000
GSMUA_Achr11G00880_001 Musa acuminata GSMUA_Achr11G00880_001 N 0.000
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N 0.000
GSMUA_Achr5G00500_001 Musa acuminata GSMUA_Achr5G00500_001 N 0.000
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N 0.000
GSMUA_Achr6G31350_001 Musa acuminata GSMUA_Achr6G31350_001 N 0.000
GSMUA_Achr8G18980_001 Musa acuminata GSMUA_Achr8G18980_001 N 0.000
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N 0.000
LPERR08G05360 Leersia perrieri LPERR08G05360 N 0.000
MLOC_12466 Hordeum vulgare MLOC_12466 N 0.000
MLOC_5165 Hordeum vulgare MLOC_5165 N 0.000
MTR_1g069805 Medicago truncatula MTR_1g069805 N 0.000
MTR_7g097090 Medicago truncatula MTR_7g097090 N 0.000
OB02G43380 Oryza brachyantha OB02G43380 N 0.000
OB04G25790 Oryza brachyantha OB04G25790 N 0.000
OB08G15810 Oryza brachyantha OB08G15810 N 0.000
OBART02G05020 Oryza barthii OBART02G05020 N 0.000
OBART02G36830 Oryza barthii OBART02G36830 N 0.000
OBART04G18700 Oryza barthii OBART04G18700 N 0.000
OGLUM04G18750 Oryza glumaepatula OGLUM04G18750 N 0.000
OGLUM08G06200 Oryza glumaepatula OGLUM08G06200 N 0.000
OLONG_011232 Oryza longistaminata OLONG_011232 N 0.000
OLONG_016454 Oryza longistaminata OLONG_016454 N 0.000
OMERI02G05870 Oryza meridionalis OMERI02G05870 N 0.000
OMERI02G34720 Oryza meridionalis OMERI02G34720 N 0.000
ONIVA02G05190 Oryza nivara ONIVA02G05190 N 0.000
ONIVA02G39640 Oryza nivara ONIVA02G39640 N 0.000
ONIVA04G01950 Oryza nivara ONIVA04G01950 N 0.000
ONIVA08G05790 Oryza nivara ONIVA08G05790 N 0.000
OPUNC02G04160 Oryza punctata OPUNC02G04160 N 0.000
OPUNC02G33860 Oryza punctata OPUNC02G33860 N 0.000
OPUNC04G16450 Oryza punctata OPUNC04G16450 N 0.000
OPUNC08G05520 Oryza punctata OPUNC08G05520 N 0.000
ORGLA02G0046100 Oryza glaberrima ORGLA02G0046100 N 0.000
ORGLA02G0320500 Oryza glaberrima ORGLA02G0320500 N 0.000
ORGLA04G0158100 Oryza glaberrima ORGLA04G0158100 N 0.000
ORGLA08G0051100 Oryza glaberrima ORGLA08G0051100 N 0.000
ORUFI02G05100 Oryza rufipogon ORUFI02G05100 N 0.000
ORUFI02G38340 Oryza rufipogon ORUFI02G38340 N 0.000
ORUFI04G20200 Oryza rufipogon ORUFI04G20200 N 0.000
ORUFI08G06500 Oryza rufipogon ORUFI08G06500 N 0.000
OS02G0810900 Oryza sativa OS02G0810900 N 0.000
OS04G0515900 Oryza sativa OS04G0515900 N 0.000
OS08G0200600 Oryza sativa OS08G0200600 N 0.000
PGSC0003DMG400025505 Solanum tuberosum PGSC0003DMG400025505 N 0.000
PRUPE_ppa009628mg Prunus persica PRUPE_ppa009628mg N 0.000
Sb04g026440 Sorghum bicolor Sb04g026440 N 0.000
Si010799m.g Setaria italica Si010799m.g N 0.000
Si018001m.g Setaria italica Si018001m.g N 0.000
Si036835m.g Setaria italica Si036835m.g N 0.000
Solyc06g008360.2 Solanum lycopersicum Solyc06g008360.2 N 0.000
Solyc09g025310.2 Solanum lycopersicum Solyc09g025310.2 N 0.000
TCM_003998 Theobroma cacao TCM_003998 N 0.000
Traes_6AL_B272C86BE Triticum aestivum Traes_6AL_B272C86BE N 0.000
Traes_6AL_B92597EA9 Triticum aestivum Traes_6AL_B92597EA9 N 0.000
Traes_6BL_99F790D57 Triticum aestivum Traes_6BL_99F790D57 N 0.000
Traes_6DL_1ABE78799 Triticum aestivum Traes_6DL_1ABE78799 N 0.000
Traes_6DL_8A1342D56 Triticum aestivum Traes_6DL_8A1342D56 N 0.000
TRIUR3_23299 Triticum urartu TRIUR3_23299 N 0.000
TRIUR3_32754 Triticum urartu TRIUR3_32754 N 0.000
Ca_07743 Cicer arietinum Ca_07743 N 0.000
Pm020580 Prunus mume Pm020580 N 0.000
cassava41082.m1 Manihot esculenta cassava41082.m1 N 0.000
mgf009162m Mimulus guttatus mgf009162m N 0.000
mgf018312m Mimulus guttatus mgf018312m N 0.000
Aquca_017_00744 Aquilegia coerulea Aquca_017_00744 N 0.000
Ciclev10021312m.g Citrus clementina Ciclev10021312m.g N 0.000
Eucgr.K03256 Eucalyptus grandis Eucgr.K03256 N 0.000
gene08112-v1.0-hybrid Fragaria vesca gene08112-v1.0-hybrid N 0.000
Gorai.001G178800 Gossypium raimondii Gorai.001G178800 N 0.000
Gorai.001G254300 Gossypium raimondii Gorai.001G254300 N 0.000
Gorai.007G147300 Gossypium raimondii Gorai.007G147300 N 0.000
Lus10003548.g Linum usitatissimum Lus10003548.g N 0.000
Lus10033905.g Linum usitatissimum Lus10033905.g N 0.000
MDP0000697030 Malus domestica MDP0000697030 N 0.000
Pavir.Aa01668 Panicum virgatum Pavir.Aa01668 N 0.000
Pavir.Ab02337 Panicum virgatum Pavir.Ab02337 N 0.000
Pavir.Ga01251 Panicum virgatum Pavir.Ga01251 N 0.000
Pavir.Gb00655 Panicum virgatum Pavir.Gb00655 N 0.000
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N 0.000
Pavir.J11268 Panicum virgatum Pavir.J11268 N 0.000
SapurV1A.0006s0680 Salix purpurea SapurV1A.0006s0680 N 0.000
PK19051.1 Cannabis sativa PK19051.1 N 0.000
PDK_20s1301681g003 Phoenix dactylifera PDK_20s1301681g003 N 0.000
PDK_20s1665101g001 Phoenix dactylifera PDK_20s1665101g001 N 0.000