LIN28B (Anolis carolinensis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSACAG00000003957 T164412_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.955 0.955
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.955 0.955
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000003851 CSD 49 121

Links

Other CSD family TFs
Other Anolis carolinensis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G49010 Arabidopsis thaliana AT1G49010 D
Pm030197 Prunus mume Pm030197 I
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I
MDP0000853568 Malus domestica MDP0000853568 I
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I
Carubv10009808m.g Capsella rubella Carubv10009808m.g I
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I
Cucsa.198920 Cucumis sativus Cucsa.198920 I
30174.m008717 Ricinus communis 30174.m008717 I
Cla019277 Citrullus lanatus Cla019277 I
Ca_06612 Cicer arietinum Ca_06612 I
TCM_012262 Theobroma cacao TCM_012262 I
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I
MTR_4g111975 Medicago truncatula MTR_4g111975 I
GLYMA17G13010 Glycine max GLYMA17G13010 I
GLYMA05G07980 Glycine max GLYMA05G07980 I
Bra018772 Brassica rapa Bra018772 I
Bo6g018000 Brassica oleracea Bo6g018000 I