lin28a (Danio rerio)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSDARG00000016999 T164508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.848 0.848
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000089741 CSD 34 106
ENSDARP00000113422 CSD 28 100
ENSDARP00000116507 CSD 39 102
ENSDARP00000125674 CSD 26 98
ENSDARP00000137336 CSD 39 111

Links

Other CSD family TFs
Other Danio rerio TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PVAR5_5942 Byssochlamys spectabilis PVAR5_5942 I
MGG_05153 Magnaporthe oryzae MGG_05153 I
MPH_01921 Macrophomina phaseolina MPH_01921 I
OCS_01600 Ophiocordyceps sinensis OCS_01600 I
PCH_Pc12g14900 Penicillium rubens PCH_Pc12g14900 I
PV04_00855 Capronia semiimmersa PV04_00855 I
PV04_10066 Capronia semiimmersa PV04_10066 I
PV05_03077 Exophiala xenobiotica PV05_03077 I
PV05_09226 Exophiala xenobiotica PV05_09226 I
PV06_07392 Exophiala oligosperma PV06_07392 I
PV07_01614 Cladophialophora immunda PV07_01614 I
VDBG_02399 Verticillium albo atrum VDBG_02399 I
SAPIO_CDS8046 Scedosporium apiospermum SAPIO_CDS8046 I
SNOG_09854 Phaeosphaeria nodorum SNOG_09854 I
SPAPADRAFT_61489 Spathaspora passalidarum SPAPADRAFT_61489 I
TRIREDRAFT_55274 Trichoderma reesei TRIREDRAFT_55274 I
TSTA_122850 Talaromyces stipitatus TSTA_122850 I
VDBG_02399 Verticillium alfalfae VDBG_02399 I
Z517_04525 Fonsecaea pedrosoi Z517_04525 I
Kwal_6732 Kluyveromyces waltii Kwal_6732 I
Pc12g14900 Penicillium chrysogenum Pc12g14900 I
MAPG_04101 Magnaporthe poae MAPG_04101 I
SNOG_09854 Stagonospora nodorum SNOG_09854 I
A1O7_01132 Cladophialophora yegresii A1O7_01132 I
CADAFLAG00012297 Aspergillus flavus CADAFLAG00012297 I
ANIA_05691 Aspergillus nidulans CADANIAG00003374 I
CADAORAG00004258 Aspergillus oryzae CADAORAG00004258 I
CTRG_03493 Candida tropicalis CTRG_03493 I
EURHEDRAFT_226967 Aspergillus ruber EURHEDRAFT_226967 I
EURHEDRAFT_447990 Aspergillus ruber EURHEDRAFT_447990 I
HPODL_02161 Ogataea parapolymorpha HPODL_02161 I
MBM_00253 Marssonina brunnea MBM_00253 I
M438DRAFT_64434 Aureobasidium pullulans M438DRAFT_64434 I
KUCA_T00002773001 Kuraishia capsulata KUCA_T00002773001 I
G647_01190 Cladophialophora carrionii G647_01190 I
GGTG_05803 Gaeumannomyces graminis GGTG_05803 I
HMPREF1120_08148 Exophiala dermatitidis HMPREF1120_08148 I
TSTA_111860 Talaromyces stipitatus TSTA_111860 N
A1O5_08185 Cladophialophora psammophila A1O5_08185 N
Z519_09408 Cladophialophora bantiana Z519_09408 N
Z518_01507 Rhinocladiella mackenziei Z518_01507 N
PV06_08173 Exophiala oligosperma PV06_08173 N
BAUCODRAFT_45255 Baudoinia compniacensis BAUCODRAFT_45255 N
V499_04479 Pseudogymnoascus pannorum V499_04479 N
BN946_scf184775.g19 Trametes cinnabarina BN946_scf184775.g19 N
PV07_04955 Cladophialophora immunda PV07_04955 N
AFUA_5G01460 Aspergillus fumigatus CADAFUAG00002865 N
PV07_03849 Cladophialophora immunda PV07_03849 N
PFL1_06157 Pseudozyma flocculosa PFL1_06157 N
SAPIO_CDS4281 Scedosporium apiospermum SAPIO_CDS4281 N
ATEG_04297 Aspergillus terreus CADATEAG00009296 N
PV10_09026 Exophiala mesophila PV10_09026 N
PV09_04778 Verruconis gallopava PV09_04778 N