LIN28B (Homo sapiens)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSG00000187772 T164569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00		 Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX		 (Direct) (Direct)
LIN28B
M04664_2.00		 Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000344401 CSD 30 102

Links

Other CSD family TFs
Other Homo sapiens TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_06846 Aspergillus nidulans CADANIAG00007644 D
NCU00017 Neurospora crassa NCU00017 D
PGUG_05832 Candida guilliermondii PGUG_05832 I
SNOG_00909 Stagonospora nodorum SNOG_00909 I
A1O1_02670 Capronia coronata A1O1_02670 I
A1O3_05241 Capronia epimyces A1O3_05241 I
A1O7_01132 Cladophialophora yegresii A1O7_01132 I
AUEXF2481DRAFT_456199 Aureobasidium subglaciale AUEXF2481DRAFT_456199 I
BBA_09836 Beauveria bassiana BBA_09836 I
Bcin10g01580 Botrytis cinerea Bcin10g01580 I
ACLA_002350 Aspergillus clavatus CADACLAG00000323 I
CADAFLAG00012297 Aspergillus flavus CADAFLAG00012297 I
AFUA_5G02800 Aspergillus fumigatus CADAFUAG00002739 I
ANIA_05691 Aspergillus nidulans CADANIAG00003374 I
CADAORAG00004258 Aspergillus oryzae CADAORAG00004258 I
NFIA_040650 Neosartorya fischeri CADNFIAG00003354 I
NFIA_039290 Neosartorya fischeri CADNFIAG00003792 I
CaO19.1168 Candida albicans CaO19.1168 I
CaO19.8761 Candida albicans CaO19.8761 I
CD36_10810 Candida dubliniensis CD36_10810 I
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I
CGGC5_8784 Colletotrichum gloeosporioides CGGC5_8784 I
CH063_11393 Colletotrichum higginsianum CH063_11393 I
COCC4DRAFT_19355 Bipolaris maydis COCC4DRAFT_19355 I
COCCADRAFT_32122 Bipolaris zeicola COCCADRAFT_32122 I
COCMIDRAFT_24418 Bipolaris oryzae COCMIDRAFT_24418 I
COCSADRAFT_306311 Bipolaris sorokiniana COCSADRAFT_306311 I
COCVIDRAFT_12188 Bipolaris victoriae COCVIDRAFT_12188 I
CSUB01_04709 Colletotrichum sublineola CSUB01_04709 I
CTRG_03493 Candida tropicalis CTRG_03493 I
DEHA2C03058g Debaryomyces hansenii DEHA2C03058g I
EURHEDRAFT_226967 Aspergillus ruber EURHEDRAFT_226967 I
EURHEDRAFT_447990 Aspergillus ruber EURHEDRAFT_447990 I
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I
G647_01190 Cladophialophora carrionii G647_01190 I
GALMADRAFT_249209 Galerina marginata GALMADRAFT_249209 I
GLRG_05504 Colletotrichum graminicola GLRG_05504 I
HMPREF1120_01122 Exophiala dermatitidis HMPREF1120_01122 I
HMPREF1120_08148 Exophiala dermatitidis HMPREF1120_08148 I
HMPREF1541_00116 Cyphellophora europaea HMPREF1541_00116 I
HPODL_02161 Ogataea parapolymorpha HPODL_02161 I
JAAARDRAFT_136956 Jaapia argillacea JAAARDRAFT_136956 I
KUCA_T00002773001 Kuraishia capsulata KUCA_T00002773001 I
LEMA_P120870.1 Leptosphaeria maculans LEMA_P120870.1 I
M378DRAFT_197822 Amanita muscaria M378DRAFT_197822 I
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I
M413DRAFT_441943 Hebeloma cylindrosporum M413DRAFT_441943 I
M438DRAFT_344531 Aureobasidium pullulans M438DRAFT_344531 I
MBM_00253 Marssonina brunnea MBM_00253 I
Moror_6819 Moniliophthora roreri Moror_6819 I
MPH_01921 Macrophomina phaseolina MPH_01921 I
NechaG103320 Fusarium solani NechaG103320 I
NEUTE1DRAFT_129586 Neurospora tetrasperma NEUTE1DRAFT_129586 I
OIDMADRAFT_57009 Oidiodendron maius OIDMADRAFT_57009 I
PAXRUDRAFT_132889 Paxillus rubicundulus PAXRUDRAFT_132889 I
PCH_Pc12g14900 Penicillium rubens PCH_Pc12g14900 I
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I
PICST_32615 Scheffersomyces stipitis PICST_32615 I
PILCRDRAFT_51 Piloderma croceum PILCRDRAFT_51 I
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I
PLEOSDRAFT_158391 Pleurotus ostreatus PLEOSDRAFT_158391 I
PMAA_084030 Talaromyces marneffei PMAA_084030 I
PTRG_07169 Pyrenophora triticirepentis PTRG_07169 I
PTT_16310 Pyrenophora teres PTT_16310 I
PV04_00855 Capronia semiimmersa PV04_00855 I
PV04_10066 Capronia semiimmersa PV04_10066 I
PV06_07392 Exophiala oligosperma PV06_07392 I
PV07_00139 Cladophialophora immunda PV07_00139 I
PV07_01614 Cladophialophora immunda PV07_01614 I
PV10_02783 Exophiala mesophila PV10_02783 I
PV10_06359 Exophiala mesophila PV10_06359 I
PVAR5_3228 Byssochlamys spectabilis PVAR5_3228 I
PVAR5_5942 Byssochlamys spectabilis PVAR5_5942 I
S40288_10288 Stachybotrys chartarum S40288_10288 I
SAPIO_CDS8046 Scedosporium apiospermum SAPIO_CDS8046 I
SBOR_6332 Sclerotinia borealis SBOR_6332 I
SERLA73DRAFT_159962 Serpula lacrymans SERLA73DRAFT_159962 I
SPAPADRAFT_61489 Spathaspora passalidarum SPAPADRAFT_61489 I
TRIATDRAFT_13008 Trichoderma atroviride TRIATDRAFT_13008 I
W97_02535 Coniosporium apollinis W97_02535 I
Z517_01830 Fonsecaea pedrosoi Z517_01830 I
Z517_04525 Fonsecaea pedrosoi Z517_04525 I
estExt_fgenesh1_pg.C_40169 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40169 I
estExt_fgenesh1_pm.C_sca_18_chr2_1_00122 Nectria haematococca estExt_fgenesh1_pm.C_sca_18_chr2_1_00122 I
estExt_fgenesh3_pm.C_50537 Neurospora discreta estExt_fgenesh3_pm.C_50537 I
fgenesh1_pg.C_chr_6.1000096 Pichia stipitis fgenesh1_pg.C_chr_6.1000096 I
e_gw1.00710.51.1 Aspergillus carbonarius e_gw1.00710.51.1 I
Pc12g14900 Penicillium chrysogenum Pc12g14900 I
PMAA_084030 Penicillium marneffei PMAA_084030 I
CLUG_05915 Candida lusitaniae CLUG_05915 N
A1O3_08442 Capronia epimyces A1O3_08442 N
A1O5_08185 Cladophialophora psammophila A1O5_08185 N
AFUA_5G01460 Aspergillus fumigatus CADAFUAG00002865 N
CADANGAG00010911 Aspergillus niger CADANGAG00010911 N
CANTEDRAFT_115466 Candida tenuis CANTEDRAFT_115466 N
CLUG_05915 Clavispora lusitaniae CLUG_05915 N
JL09_g4678 Pichia kudriavzevii JL09_g4678 N
JL09_g4682 Pichia kudriavzevii JL09_g4682 N
LELG_03488 Lodderomyces elongisporus LELG_03488 N
NechaG37042 Fusarium solani NechaG37042 N
PFICI_02698 Pestalotiopsis fici PFICI_02698 N
PICST_66647 Scheffersomyces stipitis PICST_66647 N
PV07_04955 Cladophialophora immunda PV07_04955 N
PV10_09026 Exophiala mesophila PV10_09026 N
SAPIO_CDS4281 Scedosporium apiospermum SAPIO_CDS4281 N
Z519_09408 Cladophialophora bantiana Z519_09408 N
e_gw1.31.153.1 Nectria haematococca e_gw1.31.153.1 N
estExt_fgenesh1_pg.C_chr_1.20230 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20230 N
fgeneshTM_pg.13_#_14 Tremella mesenterica fgeneshTM_pg.13_#_14 N