CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.259380 *(Cucumis sativus)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02701 (zf-Dof)	IPR003851	Cucsa.259380	T171519_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.898	0.898
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.847	0.847
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.847	0.847
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.847	0.847
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.847	0.847
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.814	0.814
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.814	0.814
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.814	0.814
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.814	0.814
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.797	0.797
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.797	0.797
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.797	0.797
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.797	0.797
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.780	0.780
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.780	0.780
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.780	0.780
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.763	0.763
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.763	0.763
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.763	0.763
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.763	0.763
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.763	0.763
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.763	0.763
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.746	0.746
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.746	0.746
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.746	0.746
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.746	0.746
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.746	0.746
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.746	0.746
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.746	0.746
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.746	0.746
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.746	0.746
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.729	0.729
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.729	0.729
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.729	0.729
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.729	0.729
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.729	0.729
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.729	0.729
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.729	0.729
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.729	0.729
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.729	0.729
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.712	0.712
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.712	0.712
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.712	0.712
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.712	0.712
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.695	0.695
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.695	0.695
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.695	0.695
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.695	0.695
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.695	0.695
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.695	0.695
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.695	0.695
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.695	0.695
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.695	0.695
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.695	0.695
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.695	0.695
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.695	0.695
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.678	0.678
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.678	0.678
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.661	0.661
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.661	0.661
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.661	0.661
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.661	0.661
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.661	0.661
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.661	0.661
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.661	0.661
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.661	0.661
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.661	0.661
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.644	0.644
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.644	0.644
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.644	0.644
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.644	0.644
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.644	0.644
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.644	0.644
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.627	0.627
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.627	0.627
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.627	0.627
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.627	0.627
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.627	0.627
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.627	0.627
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.627	0.627
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.610	0.610
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.610	0.610
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.593	0.593
DOF4.2 M06856_2.00	Arabidopsis thaliana	NNHWWWRCCTTTTTNNHNH	DNDNNAAAAAGGYWWWDNN	Dap-seq OMalley et al.(2016) dof42_col_a	0.508	0.508
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.259380.1	Dof	28	86	QEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRKP

Links
Other Dof family TFs
Other *Cucumis sativus* TFs

1948 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZNF143	Homo sapiens	ENSG00000166478	D
Zfp143	Mus musculus	ENSMUSG00000061079	D
ZNF143	Sorex araneus	ENSSARG00000007780	I
LotgiG222832	Lottia gigantea	LotgiG222832	I
ENSXMAG00000005152	Xiphophorus maculatus	ENSXMAG00000005152	I
ZNF143	Tursiops truncatus	ENSTTRG00000015353	I
ENSTSYG00000004324	Tarsius syrichta	ENSTSYG00000004324	I
znf143	Takifugu rubripes	ENSTRUG00000009324	I
znf143b	Tetraodon nigroviridis	ENSTNIG00000013739	I
ENSTGUG00000008153	Taeniopygia guttata	ENSTGUG00000008153	I
ENSSTOG00000009647	Ictidomys tridecemlineatus	ENSSTOG00000009647	I
Aan_R006576	Calypte anna	Aan_R006576	I
Zfp143	Rattus norvegicus	ENSRNOG00000010087	I
ZNF143	Pan troglodytes	ENSPTRG00000003349	I
ENSPSIG00000009683	Pelodiscus sinensis	ENSPSIG00000009683	I
ENSPPYG00000003495	Pongo abelii	ENSPPYG00000003495	I
ENSPFOG00000008911	Poecilia formosa	ENSPFOG00000008911	I
ENSPANG00000002501	Papio anubis	ENSPANG00000002501	I
znf143b	Oryzias latipes	ENSORLG00000001130	I
Ogr18895	Ophisaurus gracilis	Ogr18895	I
znf143.S	Xenopus laevis	XB-GENE-1012509	I
znf143	Xenopus tropicalis	XB-GENE-1012504	I
AAH73068	Xenopus laevis	AAH73068	I
Sakowv30044960m.g	Saccoglossus kowalevskii	Sakowv30044960m.g	I
Sakowv30036637m.g	Saccoglossus kowalevskii	Sakowv30036637m.g	I
Ocbimv22038914m.g	Octopus bimaculoides	Ocbimv22038914m.g	I
Tal_R001092	Tyto alba	Tal_R001092	I
Pvit_03784	Pogona vitticeps	Pvit_03784	I
SMAR015659	Strigamia maritima	SMAR015659	I
Myotis_brandtii_ZNF143_10021171	Myotis brandtii	Myotis_brandtii_ZNF143_10021171	I
Gfo_R011843	Geospiza fortis	Gfo_R011843	I
ENSP00000379847	Macaca fascicularis	ENSP00000379847	I
ENSP00000379847-D1	Bos grunniens	ENSP00000379847-D1	I
Brh_R005520	Buceros rhinoceros	Brh_R005520	I
Alligator_sinensis_CCG018668.1	Alligator sinensis	Alligator_sinensis_CCG018668.1	I
Afo_R014591	Aptenodytes forsteri	Afo_R014591	I
ENSONIG00000015524	Oreochromis niloticus	ENSONIG00000015524	I
ENSCSAG00000004520	Chlorocebus sabaeus	ENSCSAG00000004520	I
ZNF143	Gallus gallus	ENSGALG00000005787	I
znf143b	Gasterosteus aculeatus	ENSGACG00000009776	I
ZNF143	Felis catus	ENSFCAG00000002342	I
ENSFALG00000000985	Ficedula albicollis	ENSFALG00000000985	I
ZNF143	Erinaceus europaeus	ENSEEUG00000000955	I
ZNF143	Equus caballus	ENSECAG00000018889	I
znf143b	Danio rerio	ENSDARG00000041581	I
znf76	Danio rerio	ENSDARG00000013279	I
ENSGMOG00000001888	Gadus morhua	ENSGMOG00000001888	I
ZNF76	Cavia porcellus	ENSCPOG00000007381	I
ZNF143	Cavia porcellus	ENSCPOG00000003109	I
ZNF143	Callithrix jacchus	ENSCJAG00000011327	I
ZNF143	Canis familiaris	ENSCAFG00000007373	I
ENSAPLG00000002385	Anas platyrhynchos	ENSAPLG00000002385	I
ENSAMXG00000003833	Astyanax mexicanus	ENSAMXG00000003833	I
ENSAMEG00000003872	Ailuropoda melanoleuca	ENSAMEG00000003872	I
ZNF143	Myotis lucifugus	ENSMLUG00000000213	I
ZNF143	Anolis carolinensis	ENSACAG00000009338	I
ZNF143	Otolemur garnettii	ENSOGAG00000011518	I
ZNF143	Oryctolagus cuniculus	ENSOCUG00000005226	I
ENSOARG00000012477	Ovis aries	ENSOARG00000012477	I
ZNF143	Ornithorhynchus anatinus	ENSOANG00000005853	I
ENSMPUG00000012796	Mustela putorius furo	ENSMPUG00000012796	I
ZNF143	Monodelphis domestica	ENSMODG00000007909	I
ZNF143	Macaca mulatta	ENSMMUG00000008758	I
ZNF143	Ochotona princeps	ENSOPRG00000005466	I
ZNF143	Microcebus murinus	ENSMICG00000004353	I
ZNF143	Meleagris gallopavo	ENSMGAG00000006206	I
ENSMEUG00000003014	Macropus eugenii	ENSMEUG00000003014	I
ENSLOCG00000011655	Lepisosteus oculatus	ENSLOCG00000011655	I
ENSLOCG00000003619	Lepisosteus oculatus	ENSLOCG00000003619	I
ZNF143	Loxodonta africana	ENSLAFG00000004487	I
ENSLACG00000017669	Latimeria chalumnae	ENSLACG00000017669	I

Cucsa.259380 (Cucumis sativus) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1948 Related TFs

Cucsa.259380 **(Cucumis sativus)
Dof**