CBG07590 (Caenorhabditis briggsae)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) CBG07590 T174465_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.717 0.717
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.717 0.717
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.717 0.717
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.712 0.712
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG07590 EBF1 24 250

Links

Other EBF1 family TFs
Other Caenorhabditis briggsae TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.000
Pm006046 Prunus mume Pm006046 I 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
30131.m007263 Ricinus communis 30131.m007263 I 0.000
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.000
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
mgf009460m Mimulus guttatus mgf009460m I 0.000
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.000
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.000
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.000
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.000
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.000
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.000
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.000
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.000
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.000
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.000
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.000
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.000
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
Cla020348 Citrullus lanatus Cla020348 I 0.000
TCM_007672 Theobroma cacao TCM_007672 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000
Ca_19000 Cicer arietinum Ca_19000 I 0.000
Cla009230 Citrullus lanatus Cla009230 I 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.000
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.000
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.000
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.000
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.000
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.000
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.000
OB04G36550 Oryza brachyantha OB04G36550 N 0.000
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.000
Si022762m.g Setaria italica Si022762m.g N 0.000
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.000