PXEA_0001364901 (Protopolystoma xenopodis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) PXEA_0001364901 T174957_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.825 0.825
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.807 0.807
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.807 0.807
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.807 0.807
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.807 0.807
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.789 0.789
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.789 0.789
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.789 0.789
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0001364901-mRNA-1 EBF1 1 58

Links

Other EBF1 family TFs
Other Protopolystoma xenopodis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIBMGA013198 Bombyx mori BGIBMGA013198 D 0.000
ACOM033756 Anopheles coluzzii ACOM033756 I 0.000
PPAI008545 Phlebotomus papatasi PPAI008545 I 0.000
ASTEI08021 Anopheles stephensi ASTEI08021 I 0.000
ASIS019148 Anopheles sinensis ASIS019148 I 0.000
AQUA006380 Anopheles quadriannulatus AQUA006380 I 0.000
AMIN002289 Anopheles minimus AMIN002289 I 0.000
AMEM001654 Anopheles merus AMEM001654 I 0.000
AMEC015151 Anopheles melas AMEC015151 I 0.000
AMAM006284 Anopheles maculatus AMAM006284 I 0.000
AFUN009221 Anopheles funestus AFUN009221 I 0.000
AFAF007581 Anopheles farauti AFAF007581 I 0.000
AEPI006953 Anopheles epiroticus AEPI006953 I 0.000
ADIR010044 Anopheles dirus ADIR010044 I 0.000
ACUA025676 Anopheles culicifacies ACUA025676 I 0.000
ACHR007539 Anopheles christyi ACHR007539 I 0.000
AATE021108 Anopheles atroparvus AATE021108 I 0.000
AARA001656 Anopheles arabiensis AARA001656 I 0.000
AALB009393 Anopheles albimanus AALB009393 I 0.000
LCUP013174 Lucilia cuprina LCUP013174 I 0.000
YQE_05964 Dendroctonus ponderosae YQE_05964 I 0.000
SINV23626 Solenopsis invicta SINV23626 I 0.000
PHUM322020 Pediculus humanus PHUM322020 I 0.000
KGM_08612 Danaus plexippus KGM_08612 I 0.000
HMEL014166 Heliconius melpomene HMEL014166 I 0.000
GI15686 Drosophila mojavensis FBgn0138435 I 0.000
DAPPUDRAFT_43067 Daphnia pulex DAPPUDRAFT_43067 I 0.000