FOXB1 (Tetraodon nigroviridis)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00250 (Forkhead) IPR001766 ENSTNIG00000008393 T187186_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxb1
M01983_2.00 		Mus musculus
TRTTKAYWYW
WRWRTMAAYA		 PBM
Weirauch et al.(2014)
pTH2808 		0.921 0.977
FOXB1
M03028_2.00 		Homo sapiens
GAATGACACRGCKV
BMGCYGTGTCATTC		 SELEX
Jolma et al.(2013)
FOXB1_1 		0.921 0.977
FOXB1
M03029_2.00 		Homo sapiens
WRWGTMAATATTKACWYW
WRWGTMAATATTKACWYW		 SELEX
Jolma et al.(2013)
FOXB1_2 		0.921 0.977
FOXB1
M03030_2.00 		Homo sapiens
WTRTTKACWTW
WAWGTMAAYAW		 SELEX
Jolma et al.(2013)
FOXB1_3 		0.921 0.977
FOXB1
M03031_2.00 		Homo sapiens
NTRTTTACW
WGTAAAYAN		 SELEX
Jolma et al.(2013)
FOXB1_4 		0.921 0.977
FOXB1
M04837_2.00 		Homo sapiens
NWRDGYMAATATTKRCWYWD
HWRWGYMAATATTKRCHYWN		 SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX 		0.921 0.977
FOXB1
M04838_2.00 		Homo sapiens
NWRNGYMAATATTKRCDYWD
HWRHGYMAATATTKRCNYWN		 SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX 		0.921 0.977
fd96Ca
M03743_2.00 		Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW		 SELEX
Nitta et al.(2015)
fd96Ca_1 		0.903 0.860
lin-31
M00665_2.00 		Caenorhabditis elegans
NWRTAAAYANN
NNTRTTTAYWN		 PBM
Narasimhan et al.(2015)
pTH9116 		0.802 0.791
fkh
M03734_2.00 		Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW		 SELEX
Nitta et al.(2015)
fkh_1 		0.720 0.756
fkh
M03735_2.00 		Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD		 SELEX
Nitta et al.(2015)
fkh_2 		0.720 0.756
fkh
M06473_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Mathelier et al.(2014)
MA0446.1 		0.720 0.756
fkh
M06194_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659 		0.720 0.756
fkh
M08200_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 ChIP-seq
Contrino et al.(2012)
Mf15 		0.720 0.756
fkh
M09668_2.00 		Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA		 Misc
Kulakovskiy et al.(2009)
fkh 		0.720 0.756
Foxa2
M00162_2.00 		Mus musculus
GTAAAYAW
WTRTTTAC		 PBM
Badis et al.(2009)
Foxa2_2830 		0.713 0.744
FOXA2
M04815_2.00 		Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX 		0.713 0.744
Foxa2
M08121_2.00 		Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA		 ChIP-seq
Mathelier et al.(2014)
MA0047.2 		0.713 0.744
FOXA2
M07959_2.00 		Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha 		0.713 0.744
FOXA2
M09088_2.00 		Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN		 Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A 		0.713 0.744
Foxa2
M09104_2.00 		Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV		 Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A 		0.713 0.744
FOXA2
M09542_2.00 		Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW		 Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694 		0.713 0.744
FOXA2
M10540_2.00 		Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW		 Transfac
Matys et al.(2006)
V$HNF3B_01 		0.713 0.744
FOXA2
M10541_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3B_Q6 		0.713 0.744
AAA20679
M10575_2.00 		Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW		 Transfac
Matys et al.(2006)
V$XFD3_01 		0.713 0.744
FOXA2
M04816_2.00 		Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX 		0.713 0.744
FOXA1
M04817_2.00 		Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX 		0.694 0.733
FOXA1
M04819_2.00 		Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1 		0.694 0.733
FOXA1
M04820_2.00 		Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2 		0.694 0.733
FOXA1
M08117_2.00 		Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN		 ChIP-seq
Mathelier et al.(2014)
MA0148.3 		0.694 0.733
FOXA1
M07960_2.00 		Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha 		0.694 0.733
FOXA1
M07961_2.00 		Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha 		0.694 0.733
FOXA1
M07962_2.00 		Homo sapiens
NWVWGTAAACA
TGTTTACWBWN		 ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha 		0.694 0.733
FOXA1
M08199_2.00 		Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV		 ChIP-seq
Contrino et al.(2012)
Mv69 		0.694 0.733
FOXA1
M08028_2.00 		Homo sapiens
WRWRYAAAYA
TRTTTRYWYW		 ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1 		0.694 0.733
FOXA1
M09090_2.00 		Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB		 Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A 		0.694 0.733
Foxa1
M09103_2.00 		Mus musculus
TRTTKACWYW
WRWGTMAAYA		 Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A 		0.694 0.733
FOXA1
M09544_2.00 		Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2 		0.694 0.733
FOXA1
M09543_2.00 		Homo sapiens
WRWGTAAACA
TGTTTACWYW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1 		0.694 0.733
FOXA1
M09545_2.00 		Homo sapiens
WRWGTAAAYA
TRTTTACWYW		 Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831 		0.694 0.733
FOXA1
M10542_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_02 		0.694 0.733
FOXA1
M10543_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_03 		0.694 0.733
FOXA1
M10544_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_01 		0.694 0.733
FOXA1
M10545_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6 		0.694 0.733
FOXA1
M10546_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_Q6 		0.694 0.733
FOXA1
M04818_2.00 		Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX 		0.694 0.733
FOXA1
M04821_2.00 		Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1 		0.694 0.733
FOXA1
M04822_2.00 		Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2 		0.694 0.733
Q2L6N7_PELSI
M01990_2.00 		Trionyx sinensis
KTRTTTACA
TGTAAAYAM		 PBM
Weirauch et al.(2014)
pTH5334 		0.681 0.686
FOXA3
M04831_2.00 		Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1 		0.677 0.756
FOXA3
M04832_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2 		0.677 0.756
FOXA3
M09096_2.00 		Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B 		0.677 0.756
Foxa3
M09106_2.00 		Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A 		0.677 0.756
FOXA3
M10557_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3G_Q4 		0.677 0.756
FOXA3
M04833_2.00 		Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1 		0.677 0.756
FOXA3
M04834_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2 		0.677 0.756
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011228 Forkhead 13 102

Links

Other Forkhead family TFs
Other Tetraodon nigroviridis TFs

538 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF292 Macaca mulatta ENSMMUG00000022458 N
ENSP00000358590 Macaca fascicularis ENSP00000358590 N
ENSP00000358590-D1 Bos grunniens ENSP00000358590-D1 N
ENSTSYG00000012884 Tarsius syrichta ENSTSYG00000012884 N
ZNF292 Tupaia belangeri ENSTBEG00000016177 N
ENSSTOG00000025840 Ictidomys tridecemlineatus ENSSTOG00000025840 N
ZNF292 Sorex araneus ENSSARG00000004191 N
Zfp292 Rattus norvegicus ENSRNOG00000031031 N
ZNF292 Pan troglodytes ENSPTRG00000018400 N
ENSPPYG00000016824 Pongo abelii ENSPPYG00000016824 N
ENSPANG00000007401 Papio anubis ENSPANG00000007401 N
ZNF292 Otolemur garnettii ENSOGAG00000031301 N
ENSOARG00000013132 Ovis aries ENSOARG00000013132 N
ENSNLEG00000012921 Nomascus leucogenys ENSNLEG00000012921 N
ENSMPUG00000009584 Mustela putorius furo ENSMPUG00000009584 N
ZNF292 Monodelphis domestica ENSMODG00000018319 N
ENSAMEG00000011505 Ailuropoda melanoleuca ENSAMEG00000011505 N
ZNF292 Myotis lucifugus ENSMLUG00000002535 N
ENSMICG00000008856 Microcebus murinus ENSMICG00000008856 N
ZNF292 Loxodonta africana ENSLAFG00000007712 N
ZNF292 Gorilla gorilla ENSGGOG00000008805 N
ZNF292 Homo sapiens ENSG00000188994 N
ZNF292 Felis catus ENSFCAG00000000698 N
ZNF292 Equus caballus ENSECAG00000018906 N
ZNF292 Dasypus novemcinctus ENSDNOG00000045555 N
ENSCSAG00000017359 Chlorocebus sabaeus ENSCSAG00000017359 N
ZNF292 Cavia porcellus ENSCPOG00000008644 N
ZNF292 Callithrix jacchus ENSCJAG00000000634 N
ZNF292 Choloepus hoffmanni ENSCHOG00000003324 N
ZNF292 Canis familiaris ENSCAFG00000003045 N
ZNF292 Bos taurus ENSBTAG00000046612 N