CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb03g034360 *(Sorghum bicolor)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	Sb03g034360	T195096_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.867	0.944
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.867	0.944
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.867	0.944
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.862	0.917
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.847	0.833
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.847	0.833
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.843	0.833
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.843	0.833
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.838	0.806
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.832	0.806
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.832	0.806
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.832	0.806
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.832	0.750
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.832	0.750
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.823	0.833
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.823	0.806
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.823	0.806
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.819	0.722
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb03g034360.1	GATA	287	322	CLHCETDRTPQWRTGPMGPKTLCNACGVRYKSGRLV

Links
Other GATA family TFs
Other *Sorghum bicolor* TFs

612 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI2G03830	Brachypodium distachyon	BRADI2G03830	I	0.000
Si002655m.g	Setaria italica	Si002655m.g	I	0.000
cassava18812.valid.m1	Manihot esculenta	cassava18812.valid.m1	I	0.000
Gorai.011G034000	Gossypium raimondii	Gorai.011G034000	I	0.000
LPERR01G03590	Leersia perrieri	LPERR01G03590	I	0.000
Lus10013917.g	Linum usitatissimum	Lus10013917.g	I	0.000
Pavir.Ca01107	Panicum virgatum	Pavir.Ca01107	I	0.000
GRMZM2G088443	Zea mays	GRMZM2G088443	I	0.000
Pavir.Ea00439	Panicum virgatum	Pavir.Ea00439	I	0.000
OS05G0163900	Oryza sativa	OS05G0163900	N	0.000
Sb03g005250	Sorghum bicolor	Sb03g005250	N	0.000
PDK_20s1551661g004	Phoenix dactylifera	PDK_20s1551661g004	N	0.000
Sb09g004820	Sorghum bicolor	Sb09g004820	N	0.000
ORUFI05G04670	Oryza rufipogon	ORUFI05G04670	N	0.000
Si012213m.g	Setaria italica	Si012213m.g	N	0.000
Traes_1AS_96F0745A2	Triticum aestivum	Traes_1AS_96F0745A2	N	0.000
Traes_1BS_1F372BED3	Triticum aestivum	Traes_1BS_1F372BED3	N	0.000
Traes_1DS_CD79239C8	Triticum aestivum	Traes_1DS_CD79239C8	N	0.000
Traes_3B_2DF1A6E5B	Triticum aestivum	Traes_3B_2DF1A6E5B	N	0.000
TRAES3BF130100030CFD_g	Triticum aestivum	TRAES3BF130100030CFD_g	N	0.000
TRIUR3_07421	Triticum urartu	TRIUR3_07421	N	0.000
TRIUR3_12818	Triticum urartu	TRIUR3_12818	N	0.000
TRIUR3_21807	Triticum urartu	TRIUR3_21807	N	0.000
evm.TU.supercontig_21.7	Carica papaya	evm.TU.supercontig_21.7	N	0.000
Pavir.J32610	Panicum virgatum	Pavir.J32610	N	0.000
BGIOSGA002833	Oryza indica	BGIOSGA002833	N	0.000
OBART05G04450	Oryza barthii	OBART05G04450	N	0.000
BRADI2G34600	Brachypodium distachyon	BRADI2G34600	N	0.000
F775_00759	Aegilops tauschii	F775_00759	N	0.000
F775_01873	Aegilops tauschii	F775_01873	N	0.000
GRMZM2G369629	Zea mays	GRMZM2G369629	N	0.000
GSMUA_Achr5G29390_001	Musa acuminata	GSMUA_Achr5G29390_001	N	0.000
LPERR05G03980	Leersia perrieri	LPERR05G03980	N	0.000
MLOC_69121	Hordeum vulgare	MLOC_69121	N	0.000
OB01G13800	Oryza brachyantha	OB01G13800	N	0.000
OB05G14140	Oryza brachyantha	OB05G14140	N	0.000
OBART01G03950	Oryza barthii	OBART01G03950	N	0.000
ORGLA05G0041400	Oryza glaberrima	ORGLA05G0041400	N	0.000
OGLUM01G04250	Oryza glumaepatula	OGLUM01G04250	N	0.000
OGLUM05G04370	Oryza glumaepatula	OGLUM05G04370	N	0.000
OLONG_015419	Oryza longistaminata	OLONG_015419	N	0.000
OMERI01G03850	Oryza meridionalis	OMERI01G03850	N	0.000
OMERI05G04410	Oryza meridionalis	OMERI05G04410	N	0.000
ONIVA01G04390	Oryza nivara	ONIVA01G04390	N	0.000
ONIVA05G04820	Oryza nivara	ONIVA05G04820	N	0.000
OPUNC01G03610	Oryza punctata	OPUNC01G03610	N	0.000
OPUNC05G04080	Oryza punctata	OPUNC05G04080	N	0.000
ORGLA01G0034700	Oryza glaberrima	ORGLA01G0034700	N	0.000

Sb03g034360 (Sorghum bicolor) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

612 Related TFs

Sb03g034360 **(Sorghum bicolor)
GATA**