CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gfo_R000751 *(Geospiza fortis)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Gfo_R000751	T195918_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Gata4 M00799_2.00	Mus musculus	NHGATWDNN	NNHWATCDN	PBM Weirauch et al.(2013) pTH1049	0.867	0.986
GATA4 M03066_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA4_1	0.867	0.986
GATA4 M04875_2.00	Homo sapiens	NHGATAASVN	NBSTTATCDN	SELEX Yin et al.(2017) GATA4_eDBD_HT-SELEX	0.867	0.986
Gata4 M08126_2.00	Mus musculus	NDVAGATAAGR	YCTTATCTBHN	ChIP-seq Mathelier et al.(2014) MA0482.1	0.867	0.986
GATA4 M09117_2.00	Homo sapiens	NVWGATAAGR	YCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA4_HUMAN.H11MO.0.A	0.867	0.986
Gata4 M09123_2.00	Mus musculus	NVWGATAAGR	YCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA4_MOUSE.H11MO.0.A	0.867	0.986
Gata4 M09556_2.00	Mus musculus	NNWGATAASV	BSTTATCWNN	Misc Heinz et al.(2010) Heart-Gata4_GSE35151	0.867	0.986
GATA4 M10590_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA4_Q3	0.867	0.986
GATA4 M10591_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA4_Q5_01	0.867	0.986
GATA4 M04876_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA4_eDBD_Methyl-HT-SELEX	0.867	0.986
GATA5 M03065_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA5_1	0.864	0.929
GATA5 M04867_2.00	Homo sapiens	NHGATAASVN	NBSTTATCDN	SELEX Yin et al.(2017) GATA5_eDBD_HT-SELEX_1	0.864	0.929
GATA5 M04868_2.00	Homo sapiens	HGATAASRATCD	HGATYSTTATCD	SELEX Yin et al.(2017) GATA5_eDBD_HT-SELEX_2	0.864	0.929
GATA5 M04871_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA5_FL_HT-SELEX_1	0.864	0.929
GATA5 M04872_2.00	Homo sapiens	WGATAASRATCD	HGATYSTTATCW	SELEX Yin et al.(2017) GATA5_FL_HT-SELEX_2	0.864	0.929
GATA5 M04869_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA5_eDBD_Methyl-HT-SELEX_1	0.864	0.929
GATA5 M04870_2.00	Homo sapiens	WGATAAVRATCT	AGATYBTTATCW	SELEX Yin et al.(2017) GATA5_eDBD_Methyl-HT-SELEX_2	0.864	0.929
GATA5 M04873_2.00	Homo sapiens	NWGATAASRN	NYSTTATCWN	SELEX Yin et al.(2017) GATA5_FL_Methyl-HT-SELEX_1	0.864	0.929
GATA5 M04874_2.00	Homo sapiens	WGATAANRATCW	WGATYNTTATCW	SELEX Yin et al.(2017) GATA5_FL_Methyl-HT-SELEX_2	0.864	0.929
Gata5 M00167_2.00	Mus musculus	NNHGAWWNN	NNWWTCDNN	PBM Badis et al.(2009) Gata5_3768	0.862	0.929
Gata5 M10598_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA5_Q4	0.862	0.929
Gata6 M00165_2.00	Mus musculus	NHGATARN	NYTATCDN	PBM Badis et al.(2009) Gata6_3769	0.855	0.914
GATA6 M04877_2.00	Homo sapiens	HGATAABVATCD	HGATBVTTATCD	SELEX Yin et al.(2017) GATA6_eDBD_HT-SELEX	0.855	0.914
GATA6 M08124_2.00	Homo sapiens	NNNAGATAAGRNN	NNYCTTATCTNNN	ChIP-seq Mathelier et al.(2014) MA1104.1	0.855	0.914
GATA6 M09118_2.00	Homo sapiens	NVWGATAAGRNNN	NNNYCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA6_HUMAN.H11MO.0.A	0.855	0.914
Gata6 M09120_2.00	Mus musculus	NVWGATAAGV	BCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA6_MOUSE.H11MO.0.A	0.855	0.914
GATA6 M10592_2.00	Homo sapiens	NNHGATWDNN	NNHWATCDNN	Transfac Matys et al.(2006) V$GATA6_01	0.855	0.914
GATA6 M10593_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA6_Q5	0.855	0.914
GATA6 M04878_2.00	Homo sapiens	HGATAABRATCW	WGATYVTTATCD	SELEX Yin et al.(2017) GATA6_eDBD_Methyl-HT-SELEX	0.855	0.914
Gata3 M00166_2.00	Mus musculus	NNNHGATHNN	NNDATCDNNN	PBM Badis et al.(2009) Gata3_1024	0.851	0.871
GATA3 M03063_2.00	Homo sapiens	HGATARVV	BBYTATCD	SELEX Jolma et al.(2013) GATA3_1	0.851	0.871
GATA3 M03064_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA3_2	0.851	0.871
GATA2 M04879_2.00	Homo sapiens	VHGATAHSV	BSDTATCDB	SELEX Yin et al.(2017) GATA2_eDBD_HT-SELEX	0.851	0.871
GATA3 M04863_2.00	Homo sapiens	HGATAASRATCW	WGATYSTTATCD	SELEX Yin et al.(2017) GATA3_FL_HT-SELEX_1	0.851	0.871
GATA3 M04864_2.00	Homo sapiens	HGATAASATCD	HGATSTTATCD	SELEX Yin et al.(2017) GATA3_FL_HT-SELEX_2	0.851	0.871
Gata3 M05867_2.00	Mus musculus	GATAAN	NTTATC	SMiLE-seq Isakova et al.(2017) GATA3	0.851	0.871
GATA2 M08125_2.00	Homo sapiens	NNAGATAAGNN	NNCTTATCTNN	ChIP-seq Mathelier et al.(2014) MA0036.3	0.851	0.871
GATA2 M07966_2.00	Homo sapiens	NVWGATAAVVN	NBBTTATCWBN	ChIP-seq Gerstein et al.(2012) HUVEC_GATA2_UCD	0.851	0.871
GATA2 M07967_2.00	Homo sapiens	BKNNNNNNNSWGATAASV	BSTTATCWSNNNNNNNMV	ChIP-seq Gerstein et al.(2012) K562b_GATA2_UCD	0.851	0.871
GATA2 M07968_2.00	Homo sapiens	NNKNNNNNNNVWGATAAV	BTTATCWBNNNNNNNMNN	ChIP-seq Gerstein et al.(2012) K562_GATA2_HudsonAlpha	0.851	0.871
GATA2 M07969_2.00	Homo sapiens	NVWGATAAVV	BBTTATCWBN	ChIP-seq Gerstein et al.(2012) K562_GATA2_UChicago	0.851	0.871
GATA2 M07970_2.00	Homo sapiens	VWGATARVVN	NBBYTATCWB	ChIP-seq Gerstein et al.(2012) SH-SY5Y_GATA2_UCD	0.851	0.871
GATA3 M07965_2.00	Homo sapiens	NWGATWRNVATCWSN	NSWGATBNYWATCWN	ChIP-seq Gerstein et al.(2012) T-47D_GATA3_HudsonAlpha	0.851	0.871
GATA2 M09119_2.00	Homo sapiens	NKKNNNNNNDVAGATAASV	BSTTATCTBHNNNNNNMMN	Misc Kulakovskiy et al.(2013) GATA2_HUMAN.H11MO.0.A	0.851	0.871
GATA3 M09116_2.00	Homo sapiens	DVAGATAAVRD	HYBTTATCTBH	Misc Kulakovskiy et al.(2013) GATA3_HUMAN.H11MO.0.A	0.851	0.871
Gata2 M09121_2.00	Mus musculus	DVAGATAASVN	NBSTTATCTBH	Misc Kulakovskiy et al.(2013) GATA2_MOUSE.H11MO.0.A	0.851	0.871
Gata3 M09122_2.00	Mus musculus	NVWGATAAVVDBH	DVHBBTTATCWBN	Misc Kulakovskiy et al.(2013) GATA3_MOUSE.H11MO.0.A	0.851	0.871
GATA2 M09550_2.00	Homo sapiens	VWGATAAGVN	NBCTTATCWB	Misc Heinz et al.(2010) K562-GATA2_GSE18829	0.851	0.871
Gata3 M09551_2.00	Mus musculus	AGATBNNNAGATARV	BYTATCTNNNVATCT	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_1	0.851	0.871
Gata3 M09552_2.00	Mus musculus	AGATBDNNNNDSWGATWRNN	NNYWATCWSHNNNNHVATCT	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_2	0.851	0.871
Gata3 M09553_2.00	Mus musculus	NNNNNNWGATNDNATCWNNN	NNNWGATNHNATCWNNNNNN	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_3	0.851	0.871
Gata3 M09554_2.00	Mus musculus	NWGATNNNNATCWNN	NNWGATNNNNATCWN	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_4	0.851	0.871
Gata3 M09555_2.00	Mus musculus	WGATAAVV	BBTTATCW	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_5	0.851	0.871
GATA2 M10594_2.00	Homo sapiens	BVNGATRNBN	NVNYATCNBV	Transfac Matys et al.(2006) V$GATA2_01	0.851	0.871
GATA2 M10595_2.00	Homo sapiens	NNWGATAASR	YSTTATCWNN	Transfac Matys et al.(2006) V$GATA2_02	0.851	0.871
GATA2 M10596_2.00	Homo sapiens	HSAGATAWBA	TVWTATCWSD	Transfac Matys et al.(2006) V$GATA2_03	0.851	0.871
GATA2 M10597_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA2_Q5	0.851	0.871
GATA3 M10586_2.00	Homo sapiens	NNGATDRNR	YNYHATCNN	Transfac Matys et al.(2006) V$GATA3_01	0.851	0.871
GATA3 M10587_2.00	Homo sapiens	NRWGATAANA	TNTTATCWYN	Transfac Matys et al.(2006) V$GATA3_02	0.851	0.871
GATA3 M10588_2.00	Homo sapiens	ANWGATMWDA	THWKATCWNT	Transfac Matys et al.(2006) V$GATA3_03	0.851	0.871
GATA3 M10589_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA3_Q4	0.851	0.871
GATA2 M04880_2.00	Homo sapiens	NHGATADSV	BSHTATCDN	SELEX Yin et al.(2017) GATA2_eDBD_Methyl-HT-SELEX	0.851	0.871
GATA3 M04865_2.00	Homo sapiens	WGATAASGATCW	WGATCSTTATCW	SELEX Yin et al.(2017) GATA3_FL_Methyl-HT-SELEX_1	0.851	0.871
GATA3 M04866_2.00	Homo sapiens	WGATAASATCW	WGATSTTATCW	SELEX Yin et al.(2017) GATA3_FL_Methyl-HT-SELEX_2	0.851	0.871
Gata1 M08127_2.00	Mus musculus	RNAGATAAGRV	BYCTTATCTNY	ChIP-seq Mathelier et al.(2014) MA0035.3	0.851	0.843
Gata1 M09124_2.00	Mus musculus	BKBNNNNNNVWGATAAVVV	BBBTTATCWBNNNNNNVMV	Misc Kulakovskiy et al.(2013) GATA1_MOUSE.H11MO.0.A	0.851	0.843
GATA1 M02738_2.00	Homo sapiens	GATWASMH	DKSTWATC	SELEX Jolma et al.(2010) GATA1_dimer	0.851	0.829
GATA1 M02739_2.00	Homo sapiens	HGATAA	TTATCD	SELEX Jolma et al.(2010) GATA1_monomer	0.851	0.829
GATA1 M04861_2.00	Homo sapiens	GATAAKDNHMTTATC	GATAAKDNHMTTATC	SELEX Yin et al.(2017) GATA1_eDBD_HT-SELEX	0.851	0.829
GATA1 M07963_2.00	Homo sapiens	NSWGATAASVN	NBSTTATCWSN	ChIP-seq Gerstein et al.(2012) K562b_GATA1_UCD	0.851	0.829
GATA1 M07964_2.00	Homo sapiens	NNKNNNNNNNSWGATAAV	BTTATCWSNNNNNNNMNN	ChIP-seq Gerstein et al.(2012) PBDE_GATA1_UCD	0.851	0.829
GATA1 M08202_2.00	Homo sapiens	NBKBNNNNNNSWGATAASVN	NBSTTATCWSNNNNNNVMVN	ChIP-seq Contrino et al.(2012) Mv73	0.851	0.829
GATA1 M08203_2.00	Homo sapiens	WGATNNNATC	GATNNNATCW	ChIP-seq Contrino et al.(2012) Mv75	0.851	0.829
GATA1 M09115_2.00	Homo sapiens	NBKBNNNNNNVWGATAAVV	BBTTATCWBNNNNNNVMVN	Misc Kulakovskiy et al.(2013) GATA1_HUMAN.H11MO.0.A	0.851	0.829
GATA1 M09549_2.00	Homo sapiens	SWGATAAGVV	BBCTTATCWS	Misc Heinz et al.(2010) K562-GATA1_GSE18829	0.851	0.829
GATA1 M10577_2.00	Homo sapiens	SVNGATDBBN	NVVHATCNBS	Transfac Matys et al.(2006) V$GATA1_01	0.851	0.829
GATA1 M10578_2.00	Homo sapiens	NHVNHGATAVKVBN	NVBMBTATCDNBDN	Transfac Matys et al.(2006) V$GATA1_02	0.851	0.829
GATA1 M10579_2.00	Homo sapiens	RNSNDGATTRBNRN	NYNVYAATCHNSNY	Transfac Matys et al.(2006) V$GATA1_03	0.851	0.829
GATA1 M10580_2.00	Homo sapiens	DNVWGATARVNVN	NBNBYTATCWBNH	Transfac Matys et al.(2006) V$GATA1_04	0.851	0.829
GATA1 M10581_2.00	Homo sapiens	VMHGATAAVM	KBTTATCDKB	Transfac Matys et al.(2006) V$GATA1_05	0.851	0.829
GATA1 M10582_2.00	Homo sapiens	MNAGATAAVR	YBTTATCTNK	Transfac Matys et al.(2006) V$GATA1_06	0.851	0.829
GATA1 M10583_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA1_10	0.851	0.829
GATA1 M10584_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA1_Q6	0.851	0.829
GATA1 M04862_2.00	Homo sapiens	GATAABNNNVTTATC	GATAABNNNVTTATC	SELEX Yin et al.(2017) GATA1_eDBD_Methyl-HT-SELEX	0.851	0.829
pnr M03757_2.00	Drosophila melanogaster	NGATAAGATAASN	NSTTATCTTATCN	SELEX Nitta et al.(2015) pnr_1	0.850	0.871
pnr M03758_2.00	Drosophila melanogaster	NHGATAASV	BSTTATCDN	SELEX Nitta et al.(2015) pnr_2	0.850	0.871
pnr M06204_2.00	Drosophila melanogaster	BWGATAA	TTATCWV	B1H Zhu et al.(2011) pnr_SANGER_5_FBgn0003117	0.850	0.871
pnr M08204_2.00	Drosophila melanogaster	ANHNNBHGATAASSDNNB	VNNHSSTTATCDVNNDNT	ChIP-seq Contrino et al.(2012) Mf28	0.850	0.871
pnr M08418_2.00	Drosophila melanogaster	YATCGATWKBY	RVMWATCGATR	ChIP-chip Mathelier et al.(2014) MA0536.1	0.850	0.871
grn M03754_2.00	Drosophila melanogaster	HGATAASV	BSTTATCD	SELEX Nitta et al.(2015) grn_1	0.845	0.886
grn M03755_2.00	Drosophila melanogaster	NHGATAAGNNNCTTATCDN	NHGATAAGNNNCTTATCDN	SELEX Nitta et al.(2015) grn_2	0.845	0.886
grn M03756_2.00	Drosophila melanogaster	NHGATAACNNNGTTATCDN	NHGATAACNNNGTTATCDN	SELEX Nitta et al.(2015) grn_3	0.845	0.886
srp M03759_2.00	Drosophila melanogaster	NHGATAAVV	BBTTATCDN	SELEX Nitta et al.(2015) srp_1	0.845	0.843
srp M03760_2.00	Drosophila melanogaster	NHGATAABV	BVTTATCDN	SELEX Nitta et al.(2015) srp_2	0.845	0.843
srp M06205_2.00	Drosophila melanogaster	VTCWABCSATAV	BTAWSGVTWGAB	B1H Zhu et al.(2011) srp_FlyReg_FBgn0003507	0.845	0.843
srp M06206_2.00	Drosophila melanogaster	WGATAAGV	BCTTATCW	B1H Zhu et al.(2011) srp_SANGER_5_FBgn0003507	0.845	0.843
srp M09670_2.00	Drosophila melanogaster	KHGATARBV	BVYTATCDM	Misc Kulakovskiy et al.(2009) srp	0.845	0.843
elt-1 M08206_2.00	Caenorhabditis elegans	GATWDNVATCT	AGATBNHWATC	ChIP-seq Contrino et al.(2012) Mw144	0.839	0.757
elt-1 M08207_2.00	Caenorhabditis elegans	TGATAASR	YSTTATCA	ChIP-seq Contrino et al.(2012) Mw145	0.839	0.757
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gfo_R000751	GATA	55	89	CVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGIN
Gfo_R000751	GATA	109	143	CANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVP

Links
Other GATA family TFs
Other *Geospiza fortis* TFs

550 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
da	Drosophila melanogaster	FBgn0000413	D
ACUA015759	Anopheles culicifacies	ACUA015759	I
TC009743	Tribolium castaneum	TC009743	I
YQE_12444	Dendroctonus ponderosae	YQE_12444	I
Cflo_06641--XP_394032.3_APIME	Camponotus floridanus	Cflo_06641--XP_394032.3_APIME	I
Hsal_01424--XP_394032.3_APIME	Harpegnathos saltator	Hsal_01424--XP_394032.3_APIME	I
CLEC011986	Cimex lectularius	CLEC011986	I
LCUP014805	Lucilia cuprina	LCUP014805	I
LCUP015675	Lucilia cuprina	LCUP015675	I
LDEC016095	Leptinotarsa decemlineata	LDEC016095	I
AALB001175	Anopheles albimanus	AALB001175	I
AARA010786	Anopheles arabiensis	AARA010786	I
AATE001337	Anopheles atroparvus	AATE001337	I
ACOM039284	Anopheles coluzzii	ACOM039284	I
PHUM374400	Pediculus humanus	PHUM374400	I
ADIR011358	Anopheles dirus	ADIR011358	I
AEPI010093	Anopheles epiroticus	AEPI010093	I
AFUN010901	Anopheles funestus	AFUN010901	I
AMAM016616	Anopheles maculatus	AMAM016616	I
AMEC022127	Anopheles melas	AMEC022127	I
AMEM007225	Anopheles merus	AMEM007225	I
AMIN007190	Anopheles minimus	AMIN007190	I
AQUA004188	Anopheles quadriannulatus	AQUA004188	I
ASTEI05038	Anopheles stephensi	ASTEI05038	I
LLOJ002325	Lutzomyia longipalpis	LLOJ002325	I
MDOA011656	Musca domestica	MDOA011656	I
GI19105	Drosophila mojavensis	FBgn0141844	I
AAEL010226	Aedes aegypti	AAEL010226	I
ACEP22357	Atta cephalotes	ACEP22357	I
ACYPI003796	Acyrthosiphon pisum	ACYPI003796	I
ADAC004782	Anopheles darlingi	ADAC004782	I
AGAP008814	Anopheles gambiae	AGAP008814	I
BGIBMGA003285	Bombyx mori	BGIBMGA003285	I
CPIJ006828	Culex quinquefasciatus	CPIJ006828	I
DAPPUDRAFT_299735	Daphnia pulex	DAPPUDRAFT_299735	I
GA18660	Drosophila pseudoobscura	FBgn0078660	I
GF15779	Drosophila ananassae	FBgn0092803	I
GG10122	Drosophila erecta	FBgn0102433	I
GH13857	Drosophila grimshawi	FBgn0121333	I
SINV15659	Solenopsis invicta	SINV15659	I
GM18305	Drosophila sechellia	FBgn0173212	I
GD23692	Drosophila simulans	FBgn0195069	I
GJ15409	Drosophila virilis	FBgn0202603	I
GK12476	Drosophila willistoni	FBgn0214486	I
GE18936	Drosophila yakuba	FBgn0236308	I
GB41727	Apis mellifera	GB41727	I
KGM_13328	Danaus plexippus	KGM_13328	I
L798_13597	Zootermopsis nevadensis	L798_13597	I
MESCA003205	Megaselia scalaris	MESCA003205	I
NV16928	Nasonia vitripennis	NV16928	I
CpipJ_CPIJ006828	Culex pipiens	CpipJ_CPIJ006828	I

Gfo_R000751 (Geospiza fortis) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

550 Related TFs

Gfo_R000751 **(Geospiza fortis)
GATA**