CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

27494.m000044 *(Ricinus communis)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	27494.m000044	T195984_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.867	0.972
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.848	0.944
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.847	0.833
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.847	0.833
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.847	0.833
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.847	0.806
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.847	0.806
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.843	0.833
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.843	0.833
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.843	0.833
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.843	0.833
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.832	0.806
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.832	0.806
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.823	0.806
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.823	0.806
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.819	0.778
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.819	0.750
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.819	0.750
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
27494.m000044	GATA	263	298	CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLF

Links
Other GATA family TFs
Other *Ricinus communis* TFs

613 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
OS01G0367900	Oryza sativa	OS01G0367900	N	0.000
Pavir.J38656	Panicum virgatum	Pavir.J38656	N	0.000
Pavir.J08354	Panicum virgatum	Pavir.J08354	N	0.000
Pavir.Eb01430	Panicum virgatum	Pavir.Eb01430	N	0.000
Pavir.Ea01374	Panicum virgatum	Pavir.Ea01374	N	0.000
mgf011812m	Mimulus guttatus	mgf011812m	N	0.000
TRIUR3_20056	Triticum urartu	TRIUR3_20056	N	0.000
Traes_1BS_3B0E04EC6	Triticum aestivum	Traes_1BS_3B0E04EC6	N	0.000
Traes_1AS_0523686DD	Triticum aestivum	Traes_1AS_0523686DD	N	0.000
Solyc06g054560.2	Solanum lycopersicum	Solyc06g054560.2	N	0.000
Si000122m.g	Setaria italica	Si000122m.g	N	0.000
SELMODRAFT_162307	Selaginella moellendorffii	SELMODRAFT_162307	N	0.000
Sb03g014780	Sorghum bicolor	Sb03g014780	N	0.000
PGSC0003DMG400030785	Solanum tuberosum	PGSC0003DMG400030785	N	0.000
BRADI2G12950	Brachypodium distachyon	BRADI2G12950	N	0.000
ORUFI01G17280	Oryza rufipogon	ORUFI01G17280	N	0.000
ORGLA01G0126700	Oryza glaberrima	ORGLA01G0126700	N	0.000
OPUNC01G16280	Oryza punctata	OPUNC01G16280	N	0.000
OMERI01G14330	Oryza meridionalis	OMERI01G14330	N	0.000
OLONG_013778	Oryza longistaminata	OLONG_013778	N	0.000
OGLUM01G17850	Oryza glumaepatula	OGLUM01G17850	N	0.000
OBART01G15490	Oryza barthii	OBART01G15490	N	0.000
OB01G25270	Oryza brachyantha	OB01G25270	N	0.000
MLOC_10329	Hordeum vulgare	MLOC_10329	N	0.000
LPERR01G13970	Leersia perrieri	LPERR01G13970	N	0.000
GRMZM2G010085	Zea mays	GRMZM2G010085	N	0.000
F775_01832	Aegilops tauschii	F775_01832	N	0.000

27494.m000044 (Ricinus communis) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

613 Related TFs

27494.m000044 **(Ricinus communis)
GATA**