cassava34898.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava34898.m1 T196028_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.972
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.857 0.944
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.857 0.944
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.857 0.944
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.851 0.917
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.851 0.917
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.842 0.889
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.842 0.889
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.842 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.778
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava34898.m1 GATA 220 255

Links

Other GATA family TFs
Other Manihot esculenta TFs

614 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00129p00111730 Amborella trichopoda AMTR_s00129p00111730 N 0.000
ARID4 Arabidopsis thaliana AT3G43240 N 0.000
BGIOSGA026888 Oryza indica BGIOSGA026888 N 0.000
BGIOSGA029700 Oryza indica BGIOSGA029700 N 0.000
Bo3g127310 Brassica oleracea Bo3g127310 N 0.000
Bra034957 Brassica rapa Bra034957 N 0.000
BRADI3G37377 Brachypodium distachyon BRADI3G37377 N 0.000
BRADI3G37397 Brachypodium distachyon BRADI3G37397 N 0.000
BRADI4G31016 Brachypodium distachyon BRADI4G31016 N 0.000
CHLREDRAFT_186244 Chlamydomonas reinhardtii CHLREDRAFT_186244 N 0.000
F775_26930 Aegilops tauschii F775_26930 N 0.000
fgenesh2_kg.5__785__AT3G43240.1 Arabidopsis lyrata fgenesh2_kg.5__785__AT3G43240.1 N 0.000
GLYMA09G08690 Glycine max GLYMA09G08690 N 0.000
GLYMA15G20380 Glycine max GLYMA15G20380 N 0.000
GLYMA16G01560 Glycine max GLYMA16G01560 N 0.000
GRMZM2G138976 Zea mays GRMZM2G138976 N 0.000
GRMZM2G140156 Zea mays GRMZM2G140156 N 0.000
GRMZM5G866423 Zea mays GRMZM5G866423 N 0.000
GSMUA_Achr10G18680_001 Musa acuminata GSMUA_Achr10G18680_001 N 0.000
GSMUA_Achr11G09250_001 Musa acuminata GSMUA_Achr11G09250_001 N 0.000
GSMUA_Achr3G05790_001 Musa acuminata GSMUA_Achr3G05790_001 N 0.000
HelroG69268 Helobdella robusta HelroG69268 N 0.000
LPERR09G08040 Leersia perrieri LPERR09G08040 N 0.000
MLOC_66426 Hordeum vulgare MLOC_66426 N 0.000
MTR_2g044550 Medicago truncatula MTR_2g044550 N 0.000
MTR_8g022980 Medicago truncatula MTR_8g022980 N 0.000
OB09G17930 Oryza brachyantha OB09G17930 N 0.000
OBART08G16790 Oryza barthii OBART08G16790 N 0.000
OBART09G11370 Oryza barthii OBART09G11370 N 0.000
OGLUM08G17510 Oryza glumaepatula OGLUM08G17510 N 0.000
OGLUM09G11760 Oryza glumaepatula OGLUM09G11760 N 0.000
OLONG_007387 Oryza longistaminata OLONG_007387 N 0.000
OMERI01G15670 Oryza meridionalis OMERI01G15670 N 0.000
ONIVA08G18320 Oryza nivara ONIVA08G18320 N 0.000
ONIVA09G11150 Oryza nivara ONIVA09G11150 N 0.000
OPUNC08G14680 Oryza punctata OPUNC08G14680 N 0.000
OPUNC09G09840 Oryza punctata OPUNC09G09840 N 0.000
ORGLA08G0146400 Oryza glaberrima ORGLA08G0146400 N 0.000
ORGLA09G0085300 Oryza glaberrima ORGLA09G0085300 N 0.000
ORUFI08G18650 Oryza rufipogon ORUFI08G18650 N 0.000
ORUFI09G12160 Oryza rufipogon ORUFI09G12160 N 0.000
OS08G0451400 Oryza sativa OS08G0451400 N 0.000
OSTLU_27261 Ostreococcus lucimarinus OSTLU_27261 N 0.000
OSTLU_94134 Ostreococcus lucimarinus OSTLU_94134 N 0.000
PGSC0003DMG400028852 Solanum tuberosum PGSC0003DMG400028852 N 0.000
POPTR_0006s13780 Populus trichocarpa POPTR_0006s13780 N 0.000
POPTR_0018s07250 Populus trichocarpa POPTR_0018s07250 N 0.000
PRUPE_ppa001668mg Prunus persica PRUPE_ppa001668mg N 0.000
Sb02g025515 Sorghum bicolor Sb02g025515 N 0.000
Sb07g022155 Sorghum bicolor Sb07g022155 N 0.000
SELMODRAFT_431374 Selaginella moellendorffii SELMODRAFT_431374 N 0.000
SELMODRAFT_449331 Selaginella moellendorffii SELMODRAFT_449331 N 0.000
Si013293m.g Setaria italica Si013293m.g N 0.000
Si029019m.g Setaria italica Si029019m.g N 0.000
Solyc12g049570.1 Solanum lycopersicum Solyc12g049570.1 N 0.000
TCM_037452 Theobroma cacao TCM_037452 N 0.000
Traes_5AL_0CF3E9D4A Triticum aestivum Traes_5AL_0CF3E9D4A N 0.000
Traes_5BL_114179614 Triticum aestivum Traes_5BL_114179614 N 0.000
Traes_5DL_E48356A5C Triticum aestivum Traes_5DL_E48356A5C N 0.000
TRIUR3_24005 Triticum urartu TRIUR3_24005 N 0.000
VIT_09s0002g00430 Vitis vinifera VIT_09s0002g00430 N 0.000
VIT_11s0016g00370 Vitis vinifera VIT_11s0016g00370 N 0.000
Ca_16182 Cicer arietinum Ca_16182 N 0.000
Ca_18326 Cicer arietinum Ca_18326 N 0.000
Cla012753 Citrullus lanatus Cla012753 N 0.000
Cla015761 Citrullus lanatus Cla015761 N 0.000
Pm013168 Prunus mume Pm013168 N 0.000
29739.m003683 Ricinus communis 29739.m003683 N 0.000
Cucsa.149260 Cucumis sativus Cucsa.149260 N 0.000
Cucsa.359860 Cucumis sativus Cucsa.359860 N 0.000
e_gw1.53.164.1 Physcomitrella patens e_gw1.53.164.1 N 0.000
estExt_fgenesh5_synt.C_400033 Volvox carteri estExt_fgenesh5_synt.C_400033 N 0.000
gw1.211.7.1 Physcomitrella patens gw1.211.7.1 N 0.000
mgf013854m Mimulus guttatus mgf013854m N 0.000
Aquca_013_00919 Aquilegia coerulea Aquca_013_00919 N 0.000
Aquca_020_00580 Aquilegia coerulea Aquca_020_00580 N 0.000
Bostr.0556s0671 Boechera stricta Bostr.0556s0671 N 0.000
Cagra.4079s0001 Capsella grandiflora Cagra.4079s0001 N 0.000
Carubv10016730m.g Capsella rubella Carubv10016730m.g N 0.000
Ciclev10007563m.g Citrus clementina Ciclev10007563m.g N 0.000
estExt_fgenesh1_pg.C_50294 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_50294 N 0.000
Eucgr.C00764 Eucalyptus grandis Eucgr.C00764 N 0.000
Eucgr.I02158 Eucalyptus grandis Eucgr.I02158 N 0.000
evm.TU.supercontig_82.51 Carica papaya evm.TU.supercontig_82.51 N 0.000
gene05453-v1.0-hybrid Fragaria vesca gene05453-v1.0-hybrid N 0.000
Gorai.001G018000 Gossypium raimondii Gorai.001G018000 N 0.000
Gorai.009G038600 Gossypium raimondii Gorai.009G038600 N 0.000
Gorai.010G095800 Gossypium raimondii Gorai.010G095800 N 0.000
Lus10027658.g Linum usitatissimum Lus10027658.g N 0.000
Lus10039924.g Linum usitatissimum Lus10039924.g N 0.000
MDP0000214795 Malus domestica MDP0000214795 N 0.000
MDP0000233594 Malus domestica MDP0000233594 N 0.000
MDP0000244853 Malus domestica MDP0000244853 N 0.000
MDP0000310024 Malus domestica MDP0000310024 N 0.000
orange1.1g004566m.g Citrus sinensis orange1.1g004566m.g N 0.000
Pavir.Bb02255 Panicum virgatum Pavir.Bb02255 N 0.000
Pavir.Fa00815 Panicum virgatum Pavir.Fa00815 N 0.000
Pavir.Fb01510 Panicum virgatum Pavir.Fb01510 N 0.000
Pavir.J03302 Panicum virgatum Pavir.J03302 N 0.000
SapurV1A.0121s0150 Salix purpurea SapurV1A.0121s0150 N 0.000
SapurV1A.0249s0150 Salix purpurea SapurV1A.0249s0150 N 0.000
Thhalv10002415m.g Eutrema salsugineum Thhalv10002415m.g N 0.000
PK11738.1 Cannabis sativa PK11738.1 N 0.000
estExt_fgeneshCV_pg.C_50315 Chlorella vulgaris estExt_fgeneshCV_pg.C_50315 N 0.000
PDK_20s1317301g006 Phoenix dactylifera PDK_20s1317301g006 N 0.000
PDK_20s1329251g001 Phoenix dactylifera PDK_20s1329251g001 N 0.000
PDK_20s1668051g003 Phoenix dactylifera PDK_20s1668051g003 N 0.000