Bostr.19424s0211 (Boechera stricta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Bostr.19424s0211 T196391_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.856 0.972
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.856 0.972
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.856 0.972
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.833
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.833
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.837 0.861
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.837 0.861
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.837 0.861
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.830 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.830 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.830 0.806
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.19424s0211.1.p GATA 199 234

Links

Other GATA family TFs
Other Boechera stricta TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIBMGA013198 Bombyx mori BGIBMGA013198 D 0.000
ACUA025676 Anopheles culicifacies ACUA025676 I 0.000
PPAI008545 Phlebotomus papatasi PPAI008545 I 0.000
ASTEI08021 Anopheles stephensi ASTEI08021 I 0.000
ASIS019148 Anopheles sinensis ASIS019148 I 0.000
AQUA006380 Anopheles quadriannulatus AQUA006380 I 0.000
AMIN002289 Anopheles minimus AMIN002289 I 0.000
AMEM001654 Anopheles merus AMEM001654 I 0.000
AMEC015151 Anopheles melas AMEC015151 I 0.000
AMEC003386 Anopheles melas AMEC003386 I 0.000
AMAM006284 Anopheles maculatus AMAM006284 I 0.000
AFUN009221 Anopheles funestus AFUN009221 I 0.000
AFAF007581 Anopheles farauti AFAF007581 I 0.000
AEPI006953 Anopheles epiroticus AEPI006953 I 0.000
ADIR010044 Anopheles dirus ADIR010044 I 0.000
ACOM033756 Anopheles coluzzii ACOM033756 I 0.000
ACHR007539 Anopheles christyi ACHR007539 I 0.000
AATE021108 Anopheles atroparvus AATE021108 I 0.000
AARA001656 Anopheles arabiensis AARA001656 I 0.000
AALB009393 Anopheles albimanus AALB009393 I 0.000
LCUP013174 Lucilia cuprina LCUP013174 I 0.000
YQE_05964 Dendroctonus ponderosae YQE_05964 I 0.000
SINV23626 Solenopsis invicta SINV23626 I 0.000
KGM_08612 Danaus plexippus KGM_08612 I 0.000
HMEL014166 Heliconius melpomene HMEL014166 I 0.000
GI15686 Drosophila mojavensis FBgn0138435 I 0.000
DAPPUDRAFT_43067 Daphnia pulex DAPPUDRAFT_43067 I 0.000