Cagra.0239s0057 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.0239s0057 T196418_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.853 0.972
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.853 0.972
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.847 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.843 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.838 0.889
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.833 0.861
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.833 0.861
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.833 0.861
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.830 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.830 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.823 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.823 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.823 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0239s0057.1.p GATA 180 215

Links

Other GATA family TFs
Other Capsella grandiflora TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PV06_10606 Exophiala oligosperma PV06_10606 N 0.000
S40288_03755 Stachybotrys chartarum S40288_03755 N 0.000
S40288_01000 Stachybotrys chartarum S40288_01000 N 0.000
S40285_08657 Stachybotrys chlorohalonata S40285_08657 N 0.000
S40285_04047 Stachybotrys chlorohalonata S40285_04047 N 0.000
S40285_02230 Stachybotrys chlorohalonata S40285_02230 N 0.000
PVAR5_0122 Byssochlamys spectabilis PVAR5_0122 N 0.000
PV11_06549 Exophiala sideris PV11_06549 N 0.000
PV08_02174 Exophiala spinifera PV08_02174 N 0.000
PV07_02862 Cladophialophora immunda PV07_02862 N 0.000
S40288_04526 Stachybotrys chartarum S40288_04526 N 0.000
PV05_00069 Exophiala xenobiotica PV05_00069 N 0.000
PV04_00699 Capronia semiimmersa PV04_00699 N 0.000
PODANS_2_6520 Podospora anserina PODANS_2_6520 N 0.000
PMAA_080390 Talaromyces marneffei PMAA_080390 N 0.000
PITC_081790 Penicillium italicum PITC_081790 N 0.000
PFICI_07869 Pestalotiopsis fici PFICI_07869 N 0.000
PEX1_030190 Penicillium expansum PEX1_030190 N 0.000
PCH_Pc16g10860 Penicillium rubens PCH_Pc16g10860 N 0.000
OIDMADRAFT_169765 Oidiodendron maius OIDMADRAFT_169765 N 0.000
X797_009746 Metarhizium robertsii X797_009746 N 0.000
PMAA_080390 Penicillium marneffei PMAA_080390 N 0.000
Pc16g10860 Penicillium chrysogenum Pc16g10860 N 0.000
estExt_Genewise1.C_12883 Cryphonectria parasitica estExt_Genewise1.C_12883 N 0.000
e_gw1.00771.84.1 Aspergillus carbonarius e_gw1.00771.84.1 N 0.000
fgenesh1_pg.sca_5_chr5_3_0000637 Nectria haematococca fgenesh1_pg.sca_5_chr5_3_0000637 N 0.000
estExt_Genewise1.C_sca_17_chr8_1_00336 Nectria haematococca estExt_Genewise1.C_sca_17_chr8_1_00336 N 0.000
Z519_11260 Cladophialophora bantiana Z519_11260 N 0.000
Z518_11281 Rhinocladiella mackenziei Z518_11281 N 0.000
Z517_00469 Fonsecaea pedrosoi Z517_00469 N 0.000
NechaG80838 Fusarium solani NechaG80838 N 0.000
VDBG_06541 Verticillium alfalfae VDBG_06541 N 0.000
VDAG_05079 Verticillium dahliae VDAG_05079 N 0.000
UCRPA7_5783 Togninia minima UCRPA7_5783 N 0.000
TSTA_114940 Talaromyces stipitatus TSTA_114940 N 0.000
TRIATDRAFT_322087 Trichoderma atroviride TRIATDRAFT_322087 N 0.000
THITE_2107846 Thielavia terrestris THITE_2107846 N 0.000
SPBR_04675 Sporothrix brasiliensis SPBR_04675 N 0.000
SAPIO_CDS8323 Scedosporium apiospermum SAPIO_CDS8323 N 0.000
CFIO01_08628 Colletotrichum fioriniae CFIO01_08628 N 0.000
FOXG_01257 Fusarium oxysporum FOXG_01257 N 0.000
FGRRES_09014 Fusarium graminearum FGRRES_09014 N 0.000
FGRRES_00217 Fusarium graminearum FGRRES_00217 N 0.000
FFUJ_08949 Fusarium fujikuroi FFUJ_08949 N 0.000
FFUJ_00276 Fusarium fujikuroi FFUJ_00276 N 0.000
F503_02152 Ophiostoma piceae uamh F503_02152 N 0.000
CSUB01_05917 Colletotrichum sublineola CSUB01_05917 N 0.000
CMQ_1388 Grosmannia clavigera CMQ_1388 N 0.000
CGGC5_8904 Colletotrichum gloeosporioides CGGC5_8904 N 0.000
FOXG_09079 Fusarium oxysporum FOXG_09079 N 0.000
CFIO01_02089 Colletotrichum fioriniae CFIO01_02089 N 0.000
CADANGAG00005441 Aspergillus niger CADANGAG00005441 N 0.000
AFUA_5G01550 Aspergillus fumigatus CADAFUAG00002870 N 0.000
ACLA_007900 Aspergillus clavatus CADACLAG00000690 N 0.000
BBA_03307 Beauveria bassiana BBA_03307 N 0.000
ARB_05893 Arthroderma benhamiae ARB_05893 N 0.000
ACRE_078350 Acremonium chrysogenum ACRE_078350 N 0.000
A1O5_13134 Cladophialophora psammophila A1O5_13134 N 0.000
M438DRAFT_402343 Aureobasidium pullulans M438DRAFT_402343 N 0.000
NechaG62595 Fusarium solani NechaG62595 N 0.000
MGYG_08351 Microsporum gypseum MGYG_08351 N 0.000
MGU_07052 Metarhizium guizhouense MGU_07052 N 0.000
MBR_09867 Metarhizium brunneum MBR_09867 N 0.000
MAPG_09611 Magnaporthe poae MAPG_09611 N 0.000
MANI_005235 Metarhizium anisopliae MANI_005235 N 0.000
MAM_07146 Metarhizium album MAM_07146 N 0.000
MAJ_09423 Metarhizium majus MAJ_09423 N 0.000
MAC_07316 Metarhizium acridum MAC_07316 N 0.000
VDBG_06541 Verticillium albo atrum VDBG_06541 N 0.000
HMPREF1624_05416 Sporothrix schenckii HMPREF1624_05416 N 0.000
HMPREF1120_00645 Exophiala dermatitidis HMPREF1120_00645 N 0.000
H072_10163 Dactylellina haptotyla H072_10163 N 0.000
GLRG_04837 Colletotrichum graminicola GLRG_04837 N 0.000
GGTG_12271 Gaeumannomyces graminis GGTG_12271 N 0.000
FVEG_11090 Fusarium verticillioides FVEG_11090 N 0.000
FVEG_06682 Fusarium verticillioides FVEG_06682 N 0.000
FPSE_06963 Fusarium pseudograminearum FPSE_06963 N 0.000