Lus10025829.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10025829.g T196639_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.862 0.944
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.862 0.944
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.862 0.944
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.857 0.917
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.851 0.889
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.851 0.889
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.861
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.861
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10025829 GATA 216 251

Links

Other GATA family TFs
Other Linum usitatissimum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL8 Arabidopsis thaliana AT1G02065 D 0.000
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.000
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.000
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.000
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.000
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.000
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.000
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.000
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.000
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.000
SPL10 Oryza sativa OS06G0659100 I 0.000
SPL8 Oryza sativa OS04G0656500 I 0.000
SPL5 Oryza sativa OS02G0177300 I 0.000
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.000
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.000
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.000
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.000
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.000
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.000
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.000
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.000
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.000
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.000
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.000
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.000
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.000
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.000
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.000
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.000
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.000
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.000
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.000
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.000
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.000
Si006559m.g Setaria italica Si006559m.g I 0.000
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.000
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.000
29983.m003158 Ricinus communis 29983.m003158 I 0.000
Cla020006 Citrullus lanatus Cla020006 I 0.000
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.000
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.000
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.000
Si022315m.g Setaria italica Si022315m.g I 0.000
Si017338m.g Setaria italica Si017338m.g I 0.000
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.000
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.000
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.000
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.000
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.000
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.000
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.000
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.000
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.000
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.000
F775_00761 Aegilops tauschii F775_00761 I 0.000
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.000
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.000
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.000
Bra033221 Brassica rapa Bra033221 I 0.000
Bra032662 Brassica rapa Bra032662 I 0.000
Bo8g118210 Brassica oleracea Bo8g118210 I 0.000
Bo5g001290 Brassica oleracea Bo5g001290 I 0.000
SPL10 Oryza indica BGIOSGA023408 I 0.000
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.000
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.000
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.000
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.000
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.000
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.000
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.000
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.000
OBART04G27990 Oryza barthii OBART04G27990 I 0.000
OB06G31100 Oryza brachyantha OB06G31100 I 0.000
OB04G34990 Oryza brachyantha OB04G34990 I 0.000
OB02G15090 Oryza brachyantha OB02G15090 I 0.000
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.000
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.000
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.000
MLOC_326 Hordeum vulgare MLOC_326 I 0.000
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.000
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.000
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.000
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.000
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.000
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.000
F775_20508 Aegilops tauschii F775_20508 N 0.000
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.000
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.000
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.000