MDP0000253174 (Malus domestica)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 MDP0000253174 T196675_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000253174 GATA 153 188

Links

Other GATA family TFs
Other Malus domestica TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000390701 Angiostrongylus cantonensis ACAC_0000390701 I
HPBE_0000907401 Heligmosomoides bakeri HPBE_0000907401 I
EEL_0000426601 Elaeophora elaphi EEL_0000426601 N
TCNE_0000157901 Toxocara canis TCNE_0000157901 N
SVE_1855700 Strongyloides venezuelensis SVE_1855700 N
SSTP_0000772800 Strongyloides stercoralis SSTP_0000772800 N
SPAL_0000999700 Strongyloides papillosus SPAL_0000999700 N
scaffold4-EXSNAP2012.68 Pristionchus exspectatus scaffold4-EXSNAP2012.68 N
RSKR_0000319400 Rhabditophanes kr3021 RSKR_0000319400 N
PTRK_0001259000 Parastrongyloides trichosuri PTRK_0001259000 N
OFLC_0001357601 Onchocerca flexuosa OFLC_0001357601 N
nOo.2.0.1.g02404 Onchocerca ochengi nOo.2.0.1.g02404 N
nDi.2.2.2.g01604 Dirofilaria immitis nDi.2.2.2.g01604 N
nAv.1.0.1.g06563 Acanthocheilonema viteae nAv.1.0.1.g06563 N
L893_g21201 Steinernema glaseri L893_g21201 N
L892_g21855 Steinernema scapterisci L892_g21855 N
EVEC_0000118201 Enterobius vermicularis EVEC_0000118201 N
WUBG_01613 Wuchereria bancrofti WUBG_01613 N
DME_0000232301 Dracunculus medinensis DME_0000232301 N
ASU_01158 Ascaris suum ASU_01158 N
ASIM_0000067201 Anisakis simplex ASIM_0000067201 N
WBGene00237417 Onchocerca volvulus WBGene00237417 N
hlh-15 Caenorhabditis elegans WBGene00001959 N
Ppa-hlh-15 Pristionchus pacificus PPA18782 N
LOAG_02658 Loa loa LOAG_02658 N
EFV58130 Trichinella spiralis EFV58130 N
CRE07382 Caenorhabditis remanei CRE07382 N
CJA03864 Caenorhabditis japonica CJA03864 N
CBN13062 Caenorhabditis brenneri CBN13062 N
CBG02112 Caenorhabditis briggsae CBG02112 N
Bm2735 Brugia malayi Bm2735 N