orange1.1g023588m.g (Citrus sinensis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 orange1.1g023588m.g T196712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.861
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.833 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.833 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.722
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g023588m GATA 213 248

Links

Other GATA family TFs
Other Citrus sinensis TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCF24 Takifugu rubripes ENSTRUG00000009376 N 0.000
ENSOARG00000000076 Ovis aries ENSOARG00000000076 N 0.000
ENSOARG00000019168 Ovis aries ENSOARG00000019168 N 0.000
ENSOCUG00000008655 Oryctolagus cuniculus ENSOCUG00000008655 N 0.000
ENSOPRG00000010556 Ochotona princeps ENSOPRG00000010556 N 0.000
ENSPANG00000017721 Papio anubis ENSPANG00000017721 N 0.000
ENSPFOG00000004192 Poecilia formosa ENSPFOG00000004192 N 0.000
ENSPSIG00000014305 Pelodiscus sinensis ENSPSIG00000014305 N 0.000
ENSPVAG00000015152 Pteropus vampyrus ENSPVAG00000015152 N 0.000
Tcf23 Rattus norvegicus ENSRNOG00000025736 N 0.000
Tcf24 Rattus norvegicus ENSRNOG00000052668 N 0.000
ENSSHAG00000012462 Sarcophilus harrisii ENSSHAG00000012462 N 0.000
TCF23 Sus scrofa ENSSSCG00000027409 N 0.000
ENSSTOG00000007256 Ictidomys tridecemlineatus ENSSTOG00000007256 N 0.000
ENSSTOG00000015523 Ictidomys tridecemlineatus ENSSTOG00000015523 N 0.000
TCF23 Ornithorhynchus anatinus ENSOANG00000003936 N 0.000
TCF23 Tursiops truncatus ENSTTRG00000005255 N 0.000
TCF24 Tursiops truncatus ENSTTRG00000017150 N 0.000
LotgiG70568 Lottia gigantea LotgiG70568 N 0.000
SPU_016445 Strongylocentrotus purpuratus SPU_016445 N 0.000
Alligator_sinensis_CCG001228.1 Alligator sinensis Alligator_sinensis_CCG001228.1 N 0.000
Cmyd_10002847 Chelonia mydas Cmyd_10002847 N 0.000
ENSP00000296096-D1 Bos grunniens ENSP00000296096-D1 N 0.000
Gfo_R001999 Geospiza fortis Gfo_R001999 N 0.000
Ogr10845 Ophisaurus gracilis Ogr10845 N 0.000
Pvit_15007 Pogona vitticeps Pvit_15007 N 0.000
e_gw.78.156.1 Branchiostoma floridae e_gw.78.156.1 N 0.000
e_gw.78.157.1 Branchiostoma floridae e_gw.78.157.1 N 0.000
gw.78.158.1 Branchiostoma floridae gw.78.158.1 N 0.000
TCF24 Homo sapiens ENSG00000261787 N 0.000
ENSAMEG00000012533 Ailuropoda melanoleuca ENSAMEG00000012533 N 0.000
ENSAMXG00000013680 Astyanax mexicanus ENSAMXG00000013680 N 0.000
TCF23 Bos taurus ENSBTAG00000014813 N 0.000
TCF24 Canis familiaris ENSCAFG00000029615 N 0.000
TCF23 Canis familiaris ENSCAFG00000030192 N 0.000
TCF23 Callithrix jacchus ENSCJAG00000001198 N 0.000
ENSCPOG00000003785 Cavia porcellus ENSCPOG00000003785 N 0.000
TCF24 Cavia porcellus ENSCPOG00000014534 N 0.000
ENSCSAG00000014111 Chlorocebus sabaeus ENSCSAG00000014111 N 0.000
TCF24 Danio rerio ENSDARG00000086944 N 0.000
TCF24 Dasypus novemcinctus ENSDNOG00000045736 N 0.000
Tcf23 Dipodomys ordii ENSDORG00000014403 N 0.000
TCF23 Equus caballus ENSECAG00000021374 N 0.000
ENSAMEG00000001827 Ailuropoda melanoleuca ENSAMEG00000001827 N 0.000
ENSGACG00000002911 Gasterosteus aculeatus ENSGACG00000002911 N 0.000
TCF24 Gorilla gorilla ENSGGOG00000027653 N 0.000
ENSLACG00000004204 Latimeria chalumnae ENSLACG00000004204 N 0.000
ENSLACG00000014458 Latimeria chalumnae ENSLACG00000014458 N 0.000
TCF23 Loxodonta africana ENSLAFG00000014587 N 0.000
ENSLOCG00000004611 Lepisosteus oculatus ENSLOCG00000004611 N 0.000
ENSMEUG00000010665 Macropus eugenii ENSMEUG00000010665 N 0.000
TCF23 Monodelphis domestica ENSMODG00000015714 N 0.000
ENSMODG00000024958 Monodelphis domestica ENSMODG00000024958 N 0.000
Tcf23 Mus musculus ENSMUSG00000006642 N 0.000
Tcf24 Mus musculus ENSMUSG00000099032 N 0.000
ENSNLEG00000010898 Nomascus leucogenys ENSNLEG00000010898 N 0.000
TCF24 Ornithorhynchus anatinus ENSOANG00000002317 N 0.000