AAI06326 (Xenopus laevis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 AAI06326 T199586_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSGALG00000002235
M02030_2.00 		Gallus gallus
AACCGGTTA
TAACCGGTT		 PBM
Weirauch et al.(2014)
pTH8565 		0.867 0.867
UBP1
M04893_2.00 		Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN		 SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX 		0.829 0.829
UBP1
M10614_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6_01 		0.829 0.829
UBP1
M10615_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6 		0.829 0.829
UBP1
M04894_2.00 		Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH		 SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX 		0.829 0.829
TFCP2
M03074_2.00 		Homo sapiens
DAWCCGGTTY
RAACCGGWTH		 SELEX
Jolma et al.(2013)
TFCP2_1 		0.804 0.804
TFCP2
M03075_2.00 		Homo sapiens
WCCGGWWHDAWCYGGW
WCCRGWTHDWWCCGGW		 SELEX
Jolma et al.(2013)
TFCP2_2 		0.804 0.804
TFCP2
M04889_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX 		0.804 0.804
TFCP2
M04891_2.00 		Homo sapiens
AWCYGGTTHNDACCGGTW
WACCGGTHNDAACCRGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX 		0.804 0.804
TFCP2
M10610_2.00 		Homo sapiens
CTKGKTHKDGC
GCHMDAMCMAG		 Transfac
Matys et al.(2006)
V$CP2_01 		0.804 0.804
TFCP2
M10611_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_02 		0.804 0.804
TFCP2
M10612_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q4 		0.804 0.804
TFCP2
M10613_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q6 		0.804 0.804
TFCP2
M04890_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX 		0.804 0.804
TFCP2
M04892_2.00 		Homo sapiens
AWCCGGWTNDAWCCGGTT
AACCGGWTHNAACCGGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX 		0.804 0.804
TFCP2L1
M04885_2.00 		Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX 		0.787 0.787
TFCP2L1
M10609_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP9_01 		0.787 0.787
TFCP2L1
M04886_2.00 		Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX 		0.787 0.787
Tcfcp2l1
M08029_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1 		0.754 0.754
Tcfcp2l1
M08030_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1 		0.754 0.754
Tcfcp2l1
M09127_2.00 		Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH		 Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C 		0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI06326 Grainyhead 41 260

Links

Other Grainyhead family TFs
Other Xenopus laevis TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRB1 Arabidopsis thaliana AT1G49950 D
TRB2 Arabidopsis thaliana AT5G67580 D
OS01G0708000 Oryza sativa OS01G0708000 D
PK06103.1 Cannabis sativa PK06103.1 D
estExt_fgenesh1_pg.C_Chr_13.00010057 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_13.00010057 D
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I
TRB3 Arabidopsis thaliana AT3G49850 I
BGIOSGA003871 Oryza indica BGIOSGA003871 I
BGIOSGA004300 Oryza indica BGIOSGA004300 I
BGIOSGA035841 Oryza indica BGIOSGA035841 I
Bo1g081300 Brassica oleracea Bo1g081300 I
Bo3g096520 Brassica oleracea Bo3g096520 I
Bo5g077530 Brassica oleracea Bo5g077530 I
Bo6g018740 Brassica oleracea Bo6g018740 I
Bo9g019040 Brassica oleracea Bo9g019040 I
Bra018818 Brassica rapa Bra018818 I
Bra024438 Brassica rapa Bra024438 I
Bra029978 Brassica rapa Bra029978 I
Bra036035 Brassica rapa Bra036035 I
Bra037837 Brassica rapa Bra037837 I
Bra037839 Brassica rapa Bra037839 I
Bra039650 Brassica rapa Bra039650 I
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I
GLYMA01G40220 Glycine max GLYMA01G40220 I
GLYMA05G22500 Glycine max GLYMA05G22500 I
GLYMA09G03390 Glycine max GLYMA09G03390 I
GLYMA11G05070 Glycine max GLYMA11G05070 I
GLYMA15G14320 Glycine max GLYMA15G14320 I
GLYMA17G17370 Glycine max GLYMA17G17370 I
GRMZM2G023667 Zea mays GRMZM2G023667 I
GRMZM2G087817 Zea mays GRMZM2G087817 I
GRMZM2G108424 Zea mays GRMZM2G108424 I
GRMZM2G136887 Zea mays GRMZM2G136887 I
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I
LPERR01G18090 Leersia perrieri LPERR01G18090 I
LPERR01G24270 Leersia perrieri LPERR01G24270 I
MLOC_10278 Hordeum vulgare MLOC_10278 I
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I
MTR_1g041765 Medicago truncatula MTR_1g041765 I
MTR_2g031870 Medicago truncatula MTR_2g031870 I
MTR_2g099610 Medicago truncatula MTR_2g099610 I
MTR_4g097130 Medicago truncatula MTR_4g097130 I
MTR_5g015340 Medicago truncatula MTR_5g015340 I
MTR_8g494240 Medicago truncatula MTR_8g494240 I
OB01G30760 Oryza brachyantha OB01G30760 I
OB01G37330 Oryza brachyantha OB01G37330 I
OB12G25520 Oryza brachyantha OB12G25520 I
OBART01G21150 Oryza barthii OBART01G21150 I
OBART01G28260 Oryza barthii OBART01G28260 I
OBART12G18680 Oryza barthii OBART12G18680 I
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I
OLONG_008332 Oryza longistaminata OLONG_008332 I
OLONG_008666 Oryza longistaminata OLONG_008666 I
OLONG_011068 Oryza longistaminata OLONG_011068 I
OMERI01G19490 Oryza meridionalis OMERI01G19490 I
OMERI01G19510 Oryza meridionalis OMERI01G19510 I
OMERI05G07460 Oryza meridionalis OMERI05G07460 I
OMERI12G14000 Oryza meridionalis OMERI12G14000 I
ONIVA01G23780 Oryza nivara ONIVA01G23780 I
ONIVA01G32190 Oryza nivara ONIVA01G32190 I
ONIVA12G17630 Oryza nivara ONIVA12G17630 I
OPUNC01G21220 Oryza punctata OPUNC01G21220 I
OPUNC01G28080 Oryza punctata OPUNC01G28080 I
OPUNC12G16890 Oryza punctata OPUNC12G16890 I
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I
OS01G0589300 Oryza sativa OS01G0589300 I
OS12G0613300 Oryza sativa OS12G0613300 I
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I
Sb03g026470 Sorghum bicolor Sb03g026470 I
Sb03g032530 Sorghum bicolor Sb03g032530 I
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I
Si002403m.g Setaria italica Si002403m.g I
Si002467m.g Setaria italica Si002467m.g I
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I
TCM_000807 Theobroma cacao TCM_000807 I
TCM_007242 Theobroma cacao TCM_007242 I
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I
TRIUR3_08672 Triticum urartu TRIUR3_08672 I
TRIUR3_10613 Triticum urartu TRIUR3_10613 I
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I
TRB1 Vitis vinifera VIT_03s0091g01030 I
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I
Ca_02232 Cicer arietinum Ca_02232 I
Ca_02722 Cicer arietinum Ca_02722 I
Ca_08043 Cicer arietinum Ca_08043 I
Ca_09355 Cicer arietinum Ca_09355 I
Ca_10058 Cicer arietinum Ca_10058 I
Cla006547 Citrullus lanatus Cla006547 I
Cla014248 Citrullus lanatus Cla014248 I
Pm002374 Prunus mume Pm002374 I
Pm021139 Prunus mume Pm021139 I
29661.m000926 Ricinus communis 29661.m000926 I
29812.m000204 Ricinus communis 29812.m000204 I
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I
Cucsa.103240 Cucumis sativus Cucsa.103240 I
Cucsa.298390 Cucumis sativus Cucsa.298390 I
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I
mgf000125m Mimulus guttatus mgf000125m I
mgf009594m Mimulus guttatus mgf009594m I
mgf010975m Mimulus guttatus mgf010975m I
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I
Carubv10009836m.g Capsella rubella Carubv10009836m.g I
Carubv10017722m.g Capsella rubella Carubv10017722m.g I
Carubv10026874m.g Capsella rubella Carubv10026874m.g I
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I
Lus10011546.g Linum usitatissimum Lus10011546.g I
Lus10014653.g Linum usitatissimum Lus10014653.g I
Lus10019260.g Linum usitatissimum Lus10019260.g I
Lus10033775.g Linum usitatissimum Lus10033775.g I
MDP0000234807 Malus domestica MDP0000234807 I
MDP0000239354 Malus domestica MDP0000239354 I
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I
Pavir.J27218 Panicum virgatum Pavir.J27218 I
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I
PK19870.1 Cannabis sativa PK19870.1 I
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I