SIX3 (Anolis carolinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSACAG00000003788 T206669_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000003684 Homeodomain 211 267

Links

Other Homeodomain family TFs
Other Anolis carolinensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABI5 Arabidopsis thaliana AT2G36270 D 0.000
DPBF3 Arabidopsis thaliana AT3G56850 D 0.000
PK24978.1 Cannabis sativa PK24978.1 D 0.000
FD Arabidopsis lyrata Al_scaffold_0007_453 I 0.000
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I 0.000
AMTR_s00101p00038080 Amborella trichopoda AMTR_s00101p00038080 I 0.000
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.000
AMTR_s00152p00081700 Amborella trichopoda AMTR_s00152p00081700 I 0.000
ATBZIP27 Arabidopsis thaliana AT2G17770 I 0.000
EEL Arabidopsis thaliana AT2G41070 I 0.000
FD Arabidopsis thaliana AT4G35900 I 0.000
BGIOSGA000613 Oryza indica BGIOSGA000613 I 0.000
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.000
BGIOSGA010835 Oryza indica BGIOSGA010835 I 0.000
BGIOSGA020087 Oryza indica BGIOSGA020087 I 0.000
BGIOSGA026419 Oryza indica BGIOSGA026419 I 0.000
Bo4g012940 Brassica oleracea Bo4g012940 I 0.000
Bo4g112690 Brassica oleracea Bo4g112690 I 0.000
Bo6g072380 Brassica oleracea Bo6g072380 I 0.000
Bo8g091160 Brassica oleracea Bo8g091160 I 0.000
Bra003253 Brassica rapa Bra003253 I 0.000
Bra007274 Brassica rapa Bra007274 I 0.000
Bra007276 Brassica rapa Bra007276 I 0.000
Bra014668 Brassica rapa Bra014668 I 0.000
Bra016953 Brassica rapa Bra016953 I 0.000
BRADI1G17335 Brachypodium distachyon BRADI1G17335 I 0.000
BRADI1G63840 Brachypodium distachyon BRADI1G63840 I 0.000
BRADI2G21820 Brachypodium distachyon BRADI2G21820 I 0.000
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I 0.000
BRADI4G43850 Brachypodium distachyon BRADI4G43850 I 0.000
F775_17024 Aegilops tauschii F775_17024 I 0.000
F775_28711 Aegilops tauschii F775_28711 I 0.000
F775_31964 Aegilops tauschii F775_31964 I 0.000
F775_32479 Aegilops tauschii F775_32479 I 0.000
F775_43558 Aegilops tauschii F775_43558 I 0.000
EEL Arabidopsis lyrata fgenesh2_kg.4__2235__AT2G41070.2 I 0.000
GLYMA03G00580 Glycine max GLYMA03G00580 I 0.000
GLYMA04G14840 Glycine max GLYMA04G14840 I 0.000
GLYMA05G25200 Glycine max GLYMA05G25200 I 0.000
GLYMA06G47220 Glycine max GLYMA06G47220 I 0.000
GLYMA08G24340 Glycine max GLYMA08G24340 I 0.000
GLYMA10G08370 Glycine max GLYMA10G08370 I 0.000
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.000
GLYMA15G35080 Glycine max GLYMA15G35080 I 0.000
GLYMA19G30230 Glycine max GLYMA19G30230 I 0.000
GRMZM2G077124 Zea mays GRMZM2G077124 I 0.000
GRMZM2G159134 Zea mays GRMZM2G159134 I 0.000
GRMZM2G161009 Zea mays GRMZM2G161009 I 0.000
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.000
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I 0.000
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I 0.000
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.000
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.000
GSMUA_Achr8G21560_001 Musa acuminata GSMUA_Achr8G21560_001 I 0.000
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I 0.000
LPERR01G30010 Leersia perrieri LPERR01G30010 I 0.000
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.000
LPERR05G16840 Leersia perrieri LPERR05G16840 I 0.000
MLOC_16096 Hordeum vulgare MLOC_16096 I 0.000
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.000
MLOC_4554 Hordeum vulgare MLOC_4554 I 0.000
MLOC_61490 Hordeum vulgare MLOC_61490 I 0.000
MLOC_6534 Hordeum vulgare MLOC_6534 I 0.000
MTR_3g010660 Medicago truncatula MTR_3g010660 I 0.000
MTR_7g088090 Medicago truncatula MTR_7g088090 I 0.000
MTR_8g043960 Medicago truncatula MTR_8g043960 I 0.000
OB01G43630 Oryza brachyantha OB01G43630 I 0.000
OB01G46760 Oryza brachyantha OB01G46760 I 0.000
OB05G28440 Oryza brachyantha OB05G28440 I 0.000
OB07G32300 Oryza brachyantha OB07G32300 I 0.000
OBART01G34790 Oryza barthii OBART01G34790 I 0.000
OBART01G37980 Oryza barthii OBART01G37980 I 0.000
OBART05G21000 Oryza barthii OBART05G21000 I 0.000
OBART07G26790 Oryza barthii OBART07G26790 I 0.000
OGLUM01G38810 Oryza glumaepatula OGLUM01G38810 I 0.000
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.000
OGLUM03G15730 Oryza glumaepatula OGLUM03G15730 I 0.000
OGLUM05G22240 Oryza glumaepatula OGLUM05G22240 I 0.000
OGLUM07G26780 Oryza glumaepatula OGLUM07G26780 I 0.000
OLONG_002030 Oryza longistaminata OLONG_002030 I 0.000
OLONG_003399 Oryza longistaminata OLONG_003399 I 0.000
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.000
OMERI01G32080 Oryza meridionalis OMERI01G32080 I 0.000
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.000
OMERI03G14020 Oryza meridionalis OMERI03G14020 I 0.000
OMERI05G18990 Oryza meridionalis OMERI05G18990 I 0.000
OMERI07G23410 Oryza meridionalis OMERI07G23410 I 0.000
ONIVA01G39770 Oryza nivara ONIVA01G39770 I 0.000
ONIVA03G16560 Oryza nivara ONIVA03G16560 I 0.000
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.000
ONIVA05G21710 Oryza nivara ONIVA05G21710 I 0.000
ONIVA07G26520 Oryza nivara ONIVA07G26520 I 0.000
OPUNC01G33790 Oryza punctata OPUNC01G33790 I 0.000
OPUNC05G18710 Oryza punctata OPUNC05G18710 I 0.000
OPUNC07G25180 Oryza punctata OPUNC07G25180 I 0.000
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I 0.000
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.000
ORGLA03G0149400 Oryza glaberrima ORGLA03G0149400 I 0.000
ORUFI01G38120 Oryza rufipogon ORUFI01G38120 I 0.000
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.000
ORUFI05G22290 Oryza rufipogon ORUFI05G22290 I 0.000
ORUFI07G27740 Oryza rufipogon ORUFI07G27740 I 0.000
OS01G0813100 Oryza sativa OS01G0813100 I 0.000
OS01G0859300 Oryza sativa OS01G0859300 I 0.000
OS03G0322700 Oryza sativa OS03G0322700 I 0.000
OS05G0489700 Oryza sativa OS05G0489700 I 0.000
OS07G0686100 Oryza sativa OS07G0686100 I 0.000
PGSC0003DMG400007208 Solanum tuberosum PGSC0003DMG400007208 I 0.000
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I 0.000
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I 0.000
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.000
POPTR_0008s01130 Populus trichocarpa POPTR_0008s01130 I 0.000
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.000
POPTR_0010s25440 Populus trichocarpa POPTR_0010s25440 I 0.000
POPTR_0010s25460 Populus trichocarpa POPTR_0010s25460 I 0.000
PRUPE_ppa008716mg Prunus persica PRUPE_ppa008716mg I 0.000
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I 0.000
Sb01g036810 Sorghum bicolor Sb01g036810 I 0.000
Sb02g043620 Sorghum bicolor Sb02g043620 I 0.000
Sb03g037740 Sorghum bicolor Sb03g037740 I 0.000
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.000
Sb09g023920 Sorghum bicolor Sb09g023920 I 0.000
AREB3 Arabidopsis lyrata scaffold_502836.1 I 0.000
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I 0.000
SELMODRAFT_227594 Selaginella moellendorffii SELMODRAFT_227594 I 0.000
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.000
SELMODRAFT_428822 Selaginella moellendorffii SELMODRAFT_428822 I 0.000
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.000
SELMODRAFT_451399 Selaginella moellendorffii SELMODRAFT_451399 I 0.000
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I 0.000
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I 0.000
Si001731m.g Setaria italica Si001731m.g I 0.000
Si022639m.g Setaria italica Si022639m.g I 0.000
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I 0.000
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I 0.000
TCM_006432 Theobroma cacao TCM_006432 I 0.000
TCM_044596 Theobroma cacao TCM_044596 I 0.000
Traes_1AL_1FFBFB058 Triticum aestivum Traes_1AL_1FFBFB058 I 0.000
Traes_1BL_DE2CF9613 Triticum aestivum Traes_1BL_DE2CF9613 I 0.000
Traes_1DL_D9BA83221 Triticum aestivum Traes_1DL_D9BA83221 I 0.000
Traes_3AL_58F294736 Triticum aestivum Traes_3AL_58F294736 I 0.000
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.000
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I 0.000
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.000
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.000
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.000
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I 0.000
Traes_4AS_F9C171219 Triticum aestivum Traes_4AS_F9C171219 I 0.000
Traes_4BL_4C9A415F3 Triticum aestivum Traes_4BL_4C9A415F3 I 0.000
Traes_4DL_F38ED7FB6 Triticum aestivum Traes_4DL_F38ED7FB6 I 0.000
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I 0.000
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I 0.000
TRIUR3_06726 Triticum urartu TRIUR3_06726 I 0.000
TRIUR3_12792 Triticum urartu TRIUR3_12792 I 0.000
TRIUR3_15490 Triticum urartu TRIUR3_15490 I 0.000
TRIUR3_21253 Triticum urartu TRIUR3_21253 I 0.000
TRIUR3_24203 Triticum urartu TRIUR3_24203 I 0.000
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.000
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.000
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.000
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I 0.000
VIT_13s0175g00120 Vitis vinifera VIT_13s0175g00120 I 0.000
Ca_08143 Cicer arietinum Ca_08143 I 0.000
Ca_15706 Cicer arietinum Ca_15706 I 0.000
Ca_23748 Cicer arietinum Ca_23748 I 0.000
Cla000389 Citrullus lanatus Cla000389 I 0.000
Cla013878 Citrullus lanatus Cla013878 I 0.000
Pm001315 Prunus mume Pm001315 I 0.000
Pm004043 Prunus mume Pm004043 I 0.000
Pm016826 Prunus mume Pm016826 I 0.000
29625.m000702 Ricinus communis 29625.m000702 I 0.000
29955.m001177 Ricinus communis 29955.m001177 I 0.000
30055.m001548 Ricinus communis 30055.m001548 I 0.000
30226.m002055 Ricinus communis 30226.m002055 I 0.000
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.000
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.000
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.000
cassava22423.valid.m1 Manihot esculenta cassava22423.valid.m1 I 0.000
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.000
Cucsa.184670 Cucumis sativus Cucsa.184670 I 0.000
Cucsa.364380 Cucumis sativus Cucsa.364380 I 0.000
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.000
mgf002176m Mimulus guttatus mgf002176m I 0.000
mgf002556m Mimulus guttatus mgf002556m I 0.000
mgf011003m Mimulus guttatus mgf011003m I 0.000
mgf015092m Mimulus guttatus mgf015092m I 0.000
Aquca_009_00009 Aquilegia coerulea Aquca_009_00009 I 0.000
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I 0.000
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.000
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.000
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I 0.000
Bostr.9345s0024 Boechera stricta Bostr.9345s0024 I 0.000
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I 0.000
Cagra.1642s0072 Capsella grandiflora Cagra.1642s0072 I 0.000
Carubv10018770m.g Capsella rubella Carubv10018770m.g I 0.000
Carubv10023893m.g Capsella rubella Carubv10023893m.g I 0.000
Ciclev10001893m.g Citrus clementina Ciclev10001893m.g I 0.000
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I 0.000
Ciclev10012205m.g Citrus clementina Ciclev10012205m.g I 0.000
Ciclev10028635m.g Citrus clementina Ciclev10028635m.g I 0.000
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I 0.000
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I 0.000
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I 0.000
evm.TU.supercontig_33.182 Carica papaya evm.TU.supercontig_33.182 I 0.000
gene00393-v1.0-hybrid Fragaria vesca gene00393-v1.0-hybrid I 0.000
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I 0.000
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I 0.000
Gorai.009G301200 Gossypium raimondii Gorai.009G301200 I 0.000
Gorai.009G301400 Gossypium raimondii Gorai.009G301400 I 0.000
Lus10008927.g Linum usitatissimum Lus10008927.g I 0.000
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.000
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.000
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.000
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.000
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.000
Lus10028889.g Linum usitatissimum Lus10028889.g I 0.000
MDP0000198495 Malus domestica MDP0000198495 I 0.000
MDP0000215106 Malus domestica MDP0000215106 I 0.000
MDP0000273211 Malus domestica MDP0000273211 I 0.000
MDP0000706379 Malus domestica MDP0000706379 I 0.000
MDP0000740787 Malus domestica MDP0000740787 I 0.000
orange1.1g020697m.g Citrus sinensis orange1.1g020697m.g I 0.000
orange1.1g021146m.g Citrus sinensis orange1.1g021146m.g I 0.000
orange1.1g037676m.g Citrus sinensis orange1.1g037676m.g I 0.000
Pavir.Ba00263 Panicum virgatum Pavir.Ba00263 I 0.000
Pavir.Bb03699 Panicum virgatum Pavir.Bb03699 I 0.000
Pavir.Eb03523 Panicum virgatum Pavir.Eb03523 I 0.000
Pavir.Ib01001 Panicum virgatum Pavir.Ib01001 I 0.000
Pavir.J05672 Panicum virgatum Pavir.J05672 I 0.000
Pavir.J34085 Panicum virgatum Pavir.J34085 I 0.000
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.000
Pavir.J38875 Panicum virgatum Pavir.J38875 I 0.000
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I 0.000
SapurV1A.0036s0950 Salix purpurea SapurV1A.0036s0950 I 0.000
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I 0.000
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.000
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I 0.000
Thhalv10017050m.g Eutrema salsugineum Thhalv10017050m.g I 0.000
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I 0.000
LjSGA_023611.1 Lotus japonicus LjSGA_023611.1 I 0.000
LjT02O17.50.nc Lotus japonicus LjT02O17.50.nc I 0.000