CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSCING00000012537 *(Ciona intestinalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSCING00000012537	T207855_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ara M06518_2.00	Drosophila melanogaster	WWACA	TGTWW	B1H Mathelier et al.(2014) MA0210.1	0.779	0.895
ara M06313_2.00	Drosophila melanogaster	TGTWWWNN	NNWWWACA	B1H Zhu et al.(2011) Ara_Cell_FBgn0015904	0.779	0.895
ara M06314_2.00	Drosophila melanogaster	DWWACA	TGTWWH	B1H Zhu et al.(2011) Ara_SOLEXA_FBgn0015904	0.779	0.895
Irx6 M00456_2.00	Mus musculus	NNDAHWN	NWDTHNN	PBM Berger et al.(2008) Irx6_2623	0.779	0.877
caup M06519_2.00	Drosophila melanogaster	WAACA	TGTTW	B1H Mathelier et al.(2014) MA0217.1	0.771	0.860
caup M06315_2.00	Drosophila melanogaster	HWDWAACA	TGTTWHWD	B1H Zhu et al.(2011) Caup_Cell_FBgn0015919	0.771	0.860
caup M06316_2.00	Drosophila melanogaster	NDDACA	TGTHHN	B1H Zhu et al.(2011) Caup_SOLEXA_FBgn0015919	0.771	0.860
Irx4 M00416_2.00	Mus musculus	NNNDAMAH	DTKTHNNN	PBM Berger et al.(2008) Irx4_2242	0.768	0.895
Irx2 M00386_2.00	Mus musculus	NNDACAHNN	NNDTGTHNN	PBM Berger et al.(2008) Irx2_0900	0.767	0.860
Irx5 M00455_2.00	Mus musculus	NNNDACAHN	NDTGTHNNN	PBM Berger et al.(2008) Irx5_2385	0.767	0.860
IRX2 M03212_2.00	Homo sapiens	NDACAYRACAHN	NDTGTYRTGTHN	SELEX Jolma et al.(2013) IRX2_1	0.767	0.860
IRX5 M03222_2.00	Homo sapiens	NDACAYRACAHN	NDTGTYRTGTHN	SELEX Jolma et al.(2013) IRX5_1	0.767	0.860
IRX5 M05315_2.00	Homo sapiens	NBDTGTHNDACAYVN	NBRTGTHNDACAHVN	SELEX Yin et al.(2017) IRX5_eDBD_HT-SELEX	0.767	0.860
IRX5 M05316_2.00	Homo sapiens	WYRYGHHNHAYRYRY	RYRYRTDNDDCRYRW	SELEX Yin et al.(2017) IRX5_eDBD_Methyl-HT-SELEX	0.767	0.860
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCINP00000023357	Homeodomain	99	158	QSHRKSATRESTNTLKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK

Links
Other Homeodomain family TFs
Other *Ciona intestinalis* TFs

387 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
RGD1560585	Rattus norvegicus	ENSRNOG00000060534	N	0.000
AAC59859	Xenopus laevis	AAC59859	N	0.000
Sakowv30042012m.g	Saccoglossus kowalevskii	Sakowv30042012m.g	N	0.000
Myotis_brandtii_Hmgb2_10018437	Myotis brandtii	Myotis_brandtii_Hmgb2_10018437	N	0.000
SPU_005572	Strongylocentrotus purpuratus	SPU_005572	N	0.000
Smp_100090	Schistosoma mansoni	Smp_100090	N	0.000
hmgb1a	Takifugu rubripes	ENSTRUG00000008452	N	0.000
ENSTBEG00000009427	Tupaia belangeri	ENSTBEG00000009427	N	0.000
ENSSTOG00000000443	Ictidomys tridecemlineatus	ENSSTOG00000000443	N	0.000
HMGB2	Sus scrofa	ENSSSCG00000009704	N	0.000
AAH44009	Xenopus laevis	AAH44009	N	0.000
AC135696.1	Rattus norvegicus	ENSRNOG00000058908	N	0.000
LOC691030	Rattus norvegicus	ENSRNOG00000057926	N	0.000
AABR07040480.1	Rattus norvegicus	ENSRNOG00000057407	N	0.000
LOC681067	Rattus norvegicus	ENSRNOG00000057013	N	0.000
AABR07040430.1	Rattus norvegicus	ENSRNOG00000056486	N	0.000
AABR07045786.1	Rattus norvegicus	ENSRNOG00000055923	N	0.000
RGD1566225	Rattus norvegicus	ENSRNOG00000055742	N	0.000
RGD1561558	Rattus norvegicus	ENSRNOG00000053609	N	0.000
AABR07041586.2	Rattus norvegicus	ENSRNOG00000052769	N	0.000
MCOS_0000588101	Mesocestoides corti	MCOS_0000588101	N	0.000
TTAC_0000939701	Hydatigera taeniaeformis	TTAC_0000939701	N	0.000
TsM_000746700	Taenia solium	TsM_000746700	N	0.000
TASK_0000795701	Taenia asiatica	TASK_0000795701	N	0.000
T265_10726	Opisthorchis viverrini	T265_10726	N	0.000
SSLN_0001302101	Schistocephalus solidus	SSLN_0001302101	N	0.000
SROB_0000500401	Schistosoma rodhaini	SROB_0000500401	N	0.000
SMTD_0001017101	Schistosoma mattheei	SMTD_0001017101	N	0.000
SMRZ_0000842001	Schistosoma margrebowiei	SMRZ_0000842001	N	0.000
SCUD_0001034301	Schistosoma curassoni	SCUD_0001034301	N	0.000
LOC103694517	Rattus norvegicus	ENSRNOG00000052269	N	0.000
HNAJ_0000227501	Hymenolepis nana	HNAJ_0000227501	N	0.000
HmN_000761000	Hymenolepis microstoma	HmN_000761000	N	0.000
EmuJ_000941400	Echinococcus multilocularis	EmuJ_000941400	N	0.000
ECANG7_07075	Echinococcus canadensis	ECANG7_07075	N	0.000
csin112095	Clonorchis sinensis	csin112095	N	0.000
A_00070	Schistosoma haematobium	A_00070	N	0.000
Sjc_0051340	Schistosoma japonicum	Sjc_0051340	N	0.000
AAH73449	Xenopus laevis	AAH73449	N	0.000
ENSGMOG00000010657	Gadus morhua	ENSGMOG00000010657	N	0.000
ENSOARG00000017078	Ovis aries	ENSOARG00000017078	N	0.000
ENSOARG00000015955	Ovis aries	ENSOARG00000015955	N	0.000
ENSOARG00000015382	Ovis aries	ENSOARG00000015382	N	0.000
ENSOARG00000011611	Ovis aries	ENSOARG00000011611	N	0.000
ENSOARG00000010383	Ovis aries	ENSOARG00000010383	N	0.000
ENSMODG00000009238	Monodelphis domestica	ENSMODG00000009238	N	0.000
ENSMODG00000004606	Monodelphis domestica	ENSMODG00000004606	N	0.000
ENSMMUG00000001275	Macaca mulatta	ENSMMUG00000001275	N	0.000
HMGB1	Microcebus murinus	ENSMICG00000006213	N	0.000
ENSOCUG00000004133	Oryctolagus cuniculus	ENSOCUG00000004133	N	0.000
hmgb1b	Gasterosteus aculeatus	ENSGACG00000011447	N	0.000
ENSECAG00000005186	Equus caballus	ENSECAG00000005186	N	0.000
ENSDNOG00000005537	Dasypus novemcinctus	ENSDNOG00000005537	N	0.000
ENSCPOG00000003985	Cavia porcellus	ENSCPOG00000003985	N	0.000
ENSCJAG00000022832	Callithrix jacchus	ENSCJAG00000022832	N	0.000
ENSCJAG00000008384	Callithrix jacchus	ENSCJAG00000008384	N	0.000
ENSCJAG00000008378	Callithrix jacchus	ENSCJAG00000008378	N	0.000
hmg1/2	Ciona intestinalis	ENSCING00000004075	N	0.000
ENSPFOG00000008464	Poecilia formosa	ENSPFOG00000008464	N	0.000
AABR07030543.1	Rattus norvegicus	ENSRNOG00000051634	N	0.000
Hmg1l1	Rattus norvegicus	ENSRNOG00000051482	N	0.000
LOC108349258	Rattus norvegicus	ENSRNOG00000047496	N	0.000
Hmg1l1	Rattus norvegicus	ENSRNOG00000034130	N	0.000
Hmgb2	Rattus norvegicus	ENSRNOG00000033321	N	0.000
AC127605.1	Rattus norvegicus	ENSRNOG00000033156	N	0.000
RGD1561694	Rattus norvegicus	ENSRNOG00000029107	N	0.000
Hmgb2l1	Rattus norvegicus	ENSRNOG00000013167	N	0.000
ENSPPYG00000011668	Pongo abelii	ENSPPYG00000011668	N	0.000
HMGB1	Bos taurus	ENSBTAG00000014862	N	0.000
ENSPANG00000011105	Papio anubis	ENSPANG00000011105	N	0.000
ENSPANG00000007527	Papio anubis	ENSPANG00000007527	N	0.000
ENSPANG00000005029	Papio anubis	ENSPANG00000005029	N	0.000
ENSONIG00000005505	Oreochromis niloticus	ENSONIG00000005505	N	0.000
ENSOGAG00000032152	Otolemur garnettii	ENSOGAG00000032152	N	0.000
ENSOGAG00000028411	Otolemur garnettii	ENSOGAG00000028411	N	0.000
ENSOCUG00000023449	Oryctolagus cuniculus	ENSOCUG00000023449	N	0.000
ENSOCUG00000021132	Oryctolagus cuniculus	ENSOCUG00000021132	N	0.000

ENSCING00000012537 (Ciona intestinalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

387 Related TFs

ENSCING00000012537 **(Ciona intestinalis)
Homeodomain**