six3a (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000058008 T208649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000075254 Homeodomain 169 225

Links

Other Homeodomain family TFs
Other Danio rerio TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY63 Arabidopsis thaliana AT1G66600 D 0.000
WRKY38 Arabidopsis thaliana AT5G22570 D 0.000
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.000
WRKY67 Arabidopsis thaliana AT1G66550 I 0.000
WRKY64 Arabidopsis thaliana AT1G66560 I 0.000
WRKY66 Arabidopsis thaliana AT1G80590 I 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA030535 Oryza indica BGIOSGA030535 I 0.000
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.000
Bo01002s040 Brassica oleracea Bo01002s040 I 0.000
Bo2g024040 Brassica oleracea Bo2g024040 I 0.000
Bo2g095820 Brassica oleracea Bo2g095820 I 0.000
Bo5g068250 Brassica oleracea Bo5g068250 I 0.000
Bra002421 Brassica rapa Bra002421 I 0.000
Bra008459 Brassica rapa Bra008459 I 0.000
Bra020196 Brassica rapa Bra020196 I 0.000
Bra020197 Brassica rapa Bra020197 I 0.000
Bra023211 Brassica rapa Bra023211 I 0.000
Bra028918 Brassica rapa Bra028918 I 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I 0.000
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.000
F775_00757 Aegilops tauschii F775_00757 I 0.000
F775_07376 Aegilops tauschii F775_07376 I 0.000
F775_07845 Aegilops tauschii F775_07845 I 0.000
F775_22808 Aegilops tauschii F775_22808 I 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.000
GLYMA09G41050 Glycine max GLYMA09G41050 I 0.000
GRMZM2G004060 Zea mays GRMZM2G004060 I 0.000
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.000
GRMZM2G441031 Zea mays GRMZM2G441031 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.000
MLOC_5971 Hordeum vulgare MLOC_5971 I 0.000
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.000
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.000
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.000
MTR_2g075700 Medicago truncatula MTR_2g075700 I 0.000
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.000
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
OB05G17240 Oryza brachyantha OB05G17240 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OBART05G08130 Oryza barthii OBART05G08130 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART11G01110 Oryza barthii OBART11G01110 I 0.000
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.000
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA09G05410 Oryza nivara ONIVA09G05410 I 0.000
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.000
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS09G0334500 Oryza sativa OS09G0334500 I 0.000
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.000
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.000
Sb02g022290 Sorghum bicolor Sb02g022290 I 0.000
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.000
Si025181m.g Setaria italica Si025181m.g I 0.000
Si028202m.g Setaria italica Si028202m.g I 0.000
TCM_006103 Theobroma cacao TCM_006103 I 0.000
TCM_019689 Theobroma cacao TCM_019689 I 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
TRIUR3_14306 Triticum urartu TRIUR3_14306 I 0.000
TRIUR3_22128 Triticum urartu TRIUR3_22128 I 0.000
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.000
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I 0.000
Ca_09495 Cicer arietinum Ca_09495 I 0.000
Ca_12915 Cicer arietinum Ca_12915 I 0.000
Ca_18932 Cicer arietinum Ca_18932 I 0.000
Cla018337 Citrullus lanatus Cla018337 I 0.000
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.000
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.000
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.000
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.000
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.000
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.000
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.000
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.000
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.000
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.000
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.000
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.000
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.000
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.000
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.000
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.000
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.000
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.000
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.000
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I 0.000
Lus10025216.g Linum usitatissimum Lus10025216.g I 0.000
Lus10030517.g Linum usitatissimum Lus10030517.g I 0.000
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.000
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.000
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.000
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.000
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.000
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.000
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.000
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.000
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.000
BGIOSGA034615 Oryza indica BGIOSGA034615 N 0.000
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.000
BGIOSGA036759 Oryza indica BGIOSGA036759 N 0.000
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N 0.000
BRADI4G25717 Brachypodium distachyon BRADI4G25717 N 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
F775_02480 Aegilops tauschii F775_02480 N 0.000
F775_03183 Aegilops tauschii F775_03183 N 0.000
F775_04232 Aegilops tauschii F775_04232 N 0.000
F775_04954 Aegilops tauschii F775_04954 N 0.000
F775_23296 Aegilops tauschii F775_23296 N 0.000
GRMZM2G169564 Zea mays GRMZM2G169564 N 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
LPERR11G00950 Leersia perrieri LPERR11G00950 N 0.000
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.000
LPERR12G01060 Leersia perrieri LPERR12G01060 N 0.000
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.000
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.000
OB11G10740 Oryza brachyantha OB11G10740 N 0.000
OB11G10760 Oryza brachyantha OB11G10760 N 0.000
OB12G11010 Oryza brachyantha OB12G11010 N 0.000
OB12G11030 Oryza brachyantha OB12G11030 N 0.000
OBART11G01090 Oryza barthii OBART11G01090 N 0.000
OBART12G00820 Oryza barthii OBART12G00820 N 0.000
OBART12G00850 Oryza barthii OBART12G00850 N 0.000
OGLUM12G01270 Oryza glumaepatula OGLUM12G01270 N 0.000
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.000
ONIVA11G01030 Oryza nivara ONIVA11G01030 N 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
OPUNC11G00940 Oryza punctata OPUNC11G00940 N 0.000
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.000
OPUNC12G00960 Oryza punctata OPUNC12G00960 N 0.000
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.000
ORGLA11G0201700 Oryza glaberrima ORGLA11G0201700 N 0.000
ORGLA12G0007300 Oryza glaberrima ORGLA12G0007300 N 0.000
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N 0.000
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.000
ORUFI11G01040 Oryza rufipogon ORUFI11G01040 N 0.000
ORUFI12G01160 Oryza rufipogon ORUFI12G01160 N 0.000
OS11G0116900 Oryza sativa OS11G0116900 N 0.000
OS11G0117500 Oryza sativa OS11G0117500 N 0.000
OS12G0116400 Oryza sativa OS12G0116400 N 0.000
OS12G0116700 Oryza sativa OS12G0116700 N 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.000
Sb08g002590 Sorghum bicolor Sb08g002590 N 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
Si011007m.g Setaria italica Si011007m.g N 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si026831m.g Setaria italica Si026831m.g N 0.000
Si027876m.g Setaria italica Si027876m.g N 0.000
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N 0.000
TRIUR3_01445 Triticum urartu TRIUR3_01445 N 0.000
TRIUR3_01447 Triticum urartu TRIUR3_01447 N 0.000
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.000
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000
Pavir.Ca00084 Panicum virgatum Pavir.Ca00084 N 0.000
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.000
Pavir.J09582 Panicum virgatum Pavir.J09582 N 0.000
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.000