meis2b (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000077840 T208701_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Meis2
M00437_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg1_2246 		0.867 1.000
MEIS2
M03147_2.00 		Homo sapiens
WTGACAGSTGTCAM
KTGACASCTGTCAW		 SELEX
Jolma et al.(2013)
MEIS2_1 		0.867 1.000
MEIS2
M03148_2.00 		Homo sapiens
DTGACAGS
SCTGTCAH		 SELEX
Jolma et al.(2013)
MEIS2_2 		0.867 1.000
Meis2
M03261_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis2_1 		0.867 1.000
Meis2
M03262_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis2_2 		0.867 1.000
MEIS2
M02740_2.00 		Homo sapiens
TGACASSTGTC
GACASSTGTCA		 SELEX
Jolma et al.(2010)
MEIS2_dimer 		0.867 1.000
MEIS2
M02741_2.00 		Homo sapiens
GGACAKNT
ANMTGTCC		 SELEX
Jolma et al.(2010)
MEIS2_monomer 		0.867 1.000
MEIS2
M05138_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX 		0.867 1.000
MEIS2
M05140_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX 		0.867 1.000
MEIS2
M09143_2.00 		Homo sapiens
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B 		0.867 1.000
Meis2
M09189_2.00 		Mus musculus
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B 		0.867 1.000
MEIS2
M05139_2.00 		Homo sapiens
YGACASSYGHCR
YGDCRSSTGTCR		 SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX 		0.867 1.000
MEIS2
M05141_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX 		0.867 1.000
hth
M06490_2.00 		Drosophila melanogaster
TGACAK
MTGTCA		 B1H
Mathelier et al.(2014)
MA0227.1 		0.867 0.964
hth
M06252_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235 		0.867 0.964
hth
M06253_2.00 		Drosophila melanogaster
NNTGACAD
HTGTCANN		 B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235 		0.867 0.964
hth
M06254_2.00 		Drosophila melanogaster
NTGACA
TGTCAN		 B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235 		0.867 0.964
Meis1
M00407_2.00 		Mus musculus
NTGACADNN
NNHTGTCAN		 PBM
Berger et al.(2008)
Meis1_2335 		0.835 0.982
Meis3
M00488_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg2_2302 		0.835 0.982
MEIS1
M03165_2.00 		Homo sapiens
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
MEIS1_1 		0.835 0.982
Meis3
M03279_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis3_1 		0.835 0.982
Meis3
M03280_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis3_2 		0.835 0.982
MEIS1
M09148_2.00 		Homo sapiens
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A 		0.835 0.982
Meis1
M09178_2.00 		Mus musculus
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A 		0.835 0.982
Meis1
M09568_2.00 		Mus musculus
VBTGWCASNN
NNSTGWCAVB		 Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085 		0.835 0.982
MEIS1
M10709_2.00 		Homo sapiens
NHNTGACAGNDN
NHNCTGTCANDN		 Transfac
Matys et al.(2006)
V$MEIS1_01 		0.835 0.982
MEIS1
M10710_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEIS1_06 		0.835 0.982
unc-62
M02185_2.00 		Caenorhabditis elegans
NHDAHANNN
NNNTDTHDN		 PBM
Weirauch et al.(2014)
pTH5781 		0.778 0.818
Pknox1
M00399_2.00 		Mus musculus
HGACRNNN
NNNYGTCD		 PBM
Berger et al.(2008)
Pknox1_2364 		0.751 0.727
Pknox2
M00468_2.00 		Mus musculus
NNNGACRNNN
NNNYGTCNNN		 PBM
Berger et al.(2008)
Pknox2_3077 		0.751 0.727
PKNOX1
M03178_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX1_1 		0.751 0.727
PKNOX2
M03195_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX2_1 		0.751 0.727
Pknox2
M03270_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Pknox2_1 		0.751 0.727
PKNOX1
M05206_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX 		0.751 0.727
PKNOX1
M05208_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX 		0.751 0.727
PKNOX2
M05246_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX 		0.751 0.727
PKNOX1
M09150_2.00 		Homo sapiens
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B 		0.751 0.727
Pknox1
M09175_2.00 		Mus musculus
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A 		0.751 0.727
PKNOX1
M10712_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PREP1_Q3 		0.751 0.727
PKNOX1
M05207_2.00 		Homo sapiens
YGWCASSTGWCR
YGWCASSTGWCR		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX 		0.751 0.727
PKNOX1
M05209_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX 		0.751 0.727
PKNOX2
M05247_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX 		0.751 0.727
achi
M03860_2.00 		Drosophila melanogaster
TGACAD
HTGTCA		 SELEX
Nitta et al.(2015)
achi_1 		0.657 0.527
achi
M03861_2.00 		Drosophila melanogaster
TGACAGMTGTCA
TGACAKCTGTCA		 SELEX
Nitta et al.(2015)
achi_2 		0.657 0.527
achi
M03862_2.00 		Drosophila melanogaster
TGACAGNNNNNNYGTCA
TGACRNNNNNNCTGTCA		 SELEX
Nitta et al.(2015)
achi_3 		0.657 0.527
vis
M03859_2.00 		Drosophila melanogaster
TGACAS
STGTCA		 SELEX
Nitta et al.(2015)
vis_1 		0.657 0.527
vis
M06534_2.00 		Drosophila melanogaster
TGACAB
BTGTCA		 B1H
Mathelier et al.(2014)
MA0252.1 		0.657 0.527
achi
M06535_2.00 		Drosophila melanogaster
TGACAG
CTGTCA		 B1H
Mathelier et al.(2014)
MA0207.1 		0.657 0.527
achi
M06345_2.00 		Drosophila melanogaster
TGTCADW
WHTGACA		 B1H
Zhu et al.(2011)
Achi_Cell_FBgn0033749 		0.657 0.527
achi
M06346_2.00 		Drosophila melanogaster
HTGACA
TGTCAD		 B1H
Zhu et al.(2011)
Achi_SOLEXA_FBgn0033749 		0.657 0.527
vis
M06343_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Vis_Cell_FBgn0033748 		0.657 0.527
vis
M06344_2.00 		Drosophila melanogaster
TGTCAD
HTGACA		 B1H
Zhu et al.(2011)
Vis_SOLEXA_FBgn0033748 		0.657 0.527
Tgif2
M00521_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif2_3451 		0.657 0.509
TGIF2
M03123_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
TGIF2_1 		0.657 0.509
TGIF2
M05032_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_HT-SELEX 		0.657 0.509
TGIF2
M05034_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_HT-SELEX 		0.657 0.509
TGIF2
M05033_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_Methyl-HT-SELEX 		0.657 0.509
TGIF2
M05035_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_Methyl-HT-SELEX 		0.657 0.509
Tgif1
M00500_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif1_2342 		0.624 0.527
TGIF1
M03223_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Jolma et al.(2013)
TGIF1_1 		0.624 0.527
TGIF1
M05317_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_HT-SELEX 		0.624 0.527
TGIF1
M09159_2.00 		Homo sapiens
TGACAGS
SCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_HUMAN.H11MO.0.A 		0.624 0.527
Tgif1
M09211_2.00 		Mus musculus
TGACAGBNV
BNVCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_MOUSE.H11MO.0.A 		0.624 0.527
TGIF1
M10740_2.00 		Homo sapiens
WHNTGACARST
ASYTGTCANDW		 Transfac
Matys et al.(2006)
V$TGIF_01 		0.624 0.527
TGIF1
M05318_2.00 		Homo sapiens
TGACAKVTGTCA
TGACABMTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_Methyl-HT-SELEX 		0.624 0.527
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000034815 Homeodomain 276 333
ENSDARP00000121019 Homeodomain 276 333

Links

Other Homeodomain family TFs
Other Danio rerio TFs

796 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC216731.3_FG001 Zea mays AC216731.3_FG001 N
AMTR_s00024p00250370 Amborella trichopoda AMTR_s00024p00250370 N
BHLH83 Arabidopsis thaliana AT1G66470 N
BHLH86 Arabidopsis thaliana AT5G37800 N
BGIOSGA002533 Oryza indica BGIOSGA002533 N
BGIOSGA008903 Oryza indica BGIOSGA008903 N
Bo00835s050 Brassica oleracea Bo00835s050 N
Bo6g101000 Brassica oleracea Bo6g101000 N
Bra019708 Brassica rapa Bra019708 N
BRADI1G42440 Brachypodium distachyon BRADI1G42440 N
BRADI2G01000 Brachypodium distachyon BRADI2G01000 N
BRADI3G53060 Brachypodium distachyon BRADI3G53060 N
F775_02947 Aegilops tauschii F775_02947 N
F775_03185 Aegilops tauschii F775_03185 N
F775_23458 Aegilops tauschii F775_23458 N
F775_25020 Aegilops tauschii F775_25020 N
F775_43492 Aegilops tauschii F775_43492 N
RSL1 Arabidopsis lyrata fgenesh2_kg.7__3192__AT5G37800.1 N
GLYMA02G41370 Glycine max GLYMA02G41370 N
GLYMA11G33840 Glycine max GLYMA11G33840 N
GLYMA14G07590 Glycine max GLYMA14G07590 N
GLYMA18G04420 Glycine max GLYMA18G04420 N
GRMZM2G066057 Zea mays GRMZM2G066057 N
GSMUA_Achr10G20230_001 Musa acuminata GSMUA_Achr10G20230_001 N
GSMUA_Achr2G22860_001 Musa acuminata GSMUA_Achr2G22860_001 N
GSMUA_Achr3G01250_001 Musa acuminata GSMUA_Achr3G01250_001 N
GSMUA_Achr6G09370_001 Musa acuminata GSMUA_Achr6G09370_001 N
LPERR01G00690 Leersia perrieri LPERR01G00690 N
LPERR02G24230 Leersia perrieri LPERR02G24230 N
MLOC_37511 Hordeum vulgare MLOC_37511 N
MTR_5g079500 Medicago truncatula MTR_5g079500 N
OB0081G10010 Oryza brachyantha OB0081G10010 N
OB01G10850 Oryza brachyantha OB01G10850 N
OB02G36990 Oryza brachyantha OB02G36990 N
OBART01G00850 Oryza barthii OBART01G00850 N
OBART02G29800 Oryza barthii OBART02G29800 N
OGLUM01G00830 Oryza glumaepatula OGLUM01G00830 N
OGLUM02G30450 Oryza glumaepatula OGLUM02G30450 N
OLONG_010619 Oryza longistaminata OLONG_010619 N
OMERI01G00290 Oryza meridionalis OMERI01G00290 N
OMERI02G28660 Oryza meridionalis OMERI02G28660 N
ONIVA01G00780 Oryza nivara ONIVA01G00780 N
ONIVA02G32560 Oryza nivara ONIVA02G32560 N
OPUNC01G00700 Oryza punctata OPUNC01G00700 N
OPUNC02G27370 Oryza punctata OPUNC02G27370 N
ORGLA01G0007400 Oryza glaberrima ORGLA01G0007400 N
ORGLA02G0253300 Oryza glaberrima ORGLA02G0253300 N
ORUFI01G00830 Oryza rufipogon ORUFI01G00830 N
ORUFI02G31420 Oryza rufipogon ORUFI02G31420 N
OS01G0111500 Oryza sativa OS01G0111500 N
OS02G0710300 Oryza sativa OS02G0710300 N
PGSC0003DMG400030650 Solanum tuberosum PGSC0003DMG400030650 N
POPTR_0004s08770 Populus trichocarpa POPTR_0004s08770 N
POPTR_0005s14360 Populus trichocarpa POPTR_0005s14360 N
PRUPE_ppa025775mg Prunus persica PRUPE_ppa025775mg N
Sb03g008290 Sorghum bicolor Sb03g008290 N
Sb04g030230 Sorghum bicolor Sb04g030230 N
RHD6 Arabidopsis lyrata scaffold_201372.1 N
SELMODRAFT_409967 Selaginella moellendorffii SELMODRAFT_409967 N
SELMODRAFT_413232 Selaginella moellendorffii SELMODRAFT_413232 N
SELMODRAFT_414414 Selaginella moellendorffii SELMODRAFT_414414 N
SELMODRAFT_418491 Selaginella moellendorffii SELMODRAFT_418491 N
SELMODRAFT_423809 Selaginella moellendorffii SELMODRAFT_423809 N
SELMODRAFT_426794 Selaginella moellendorffii SELMODRAFT_426794 N
Si004720m.g Setaria italica Si004720m.g N
Si019575m.g Setaria italica Si019575m.g N
Solyc02g091440.1 Solanum lycopersicum Solyc02g091440.1 N
TCM_019210 Theobroma cacao TCM_019210 N
Traes_3AS_0D78930B4 Triticum aestivum Traes_3AS_0D78930B4 N
TRAES3BF060500180CFD_g Triticum aestivum TRAES3BF060500180CFD_g N
Traes_6BL_9B25E6A10 Triticum aestivum Traes_6BL_9B25E6A10 N
Traes_6BL_A964BE52B Triticum aestivum Traes_6BL_A964BE52B N
Traes_6DL_3DCFAB31F Triticum aestivum Traes_6DL_3DCFAB31F N
Traes_7BS_A0A8B25DF Triticum aestivum Traes_7BS_A0A8B25DF N
Traes_7DS_4053B6E88 Triticum aestivum Traes_7DS_4053B6E88 N
TRIUR3_11692 Triticum urartu TRIUR3_11692 N
TRIUR3_14379 Triticum urartu TRIUR3_14379 N
TRIUR3_27166 Triticum urartu TRIUR3_27166 N
VIT_14s0006g01470 Vitis vinifera VIT_14s0006g01470 N
Ca_16136 Cicer arietinum Ca_16136 N
Cla020067 Citrullus lanatus Cla020067 N
Pm014359 Prunus mume Pm014359 N
28609.m000209 Ricinus communis 28609.m000209 N
cassava10199.m1 Manihot esculenta cassava10199.m1 N
Cucsa.006340 Cucumis sativus Cucsa.006340 N
estExt_fgenesh1_pg.C_1470079 Physcomitrella patens estExt_fgenesh1_pg.C_1470079 N
estExt_fgenesh1_pg.C_840011 Physcomitrella patens estExt_fgenesh1_pg.C_840011 N
mgf025678m Mimulus guttatus mgf025678m N
Aquca_041_00164 Aquilegia coerulea Aquca_041_00164 N
Bostr.9638s0100 Boechera stricta Bostr.9638s0100 N
Cagra.2629s0001 Capsella grandiflora Cagra.2629s0001 N
Cagra.8123s0001 Capsella grandiflora Cagra.8123s0001 N
Carubv10007389m.g Capsella rubella Carubv10007389m.g N
Carubv10021322m.g Capsella rubella Carubv10021322m.g N
Ciclev10013420m.g Citrus clementina Ciclev10013420m.g N
Eucgr.F02831 Eucalyptus grandis Eucgr.F02831 N
evm.TU.contig_27490 Carica papaya evm.TU.contig_27490 N
gene17937-v1.0-hybrid Fragaria vesca gene17937-v1.0-hybrid N
Gorai.001G086800 Gossypium raimondii Gorai.001G086800 N
Gorai.004G064400 Gossypium raimondii Gorai.004G064400 N
Lus10017634.g Linum usitatissimum Lus10017634.g N
Lus10033592.g Linum usitatissimum Lus10033592.g N
MDP0000435722 Malus domestica MDP0000435722 N
orange1.1g038918m.g Citrus sinensis orange1.1g038918m.g N
Pavir.Aa00611 Panicum virgatum Pavir.Aa00611 N
Pavir.Db01008 Panicum virgatum Pavir.Db01008 N
Pavir.Eb00817 Panicum virgatum Pavir.Eb00817 N
Pavir.J04215 Panicum virgatum Pavir.J04215 N
Pavir.J20533 Panicum virgatum Pavir.J20533 N
SapurV1A.0102s0280 Salix purpurea SapurV1A.0102s0280 N
SapurV1A.0230s0340 Salix purpurea SapurV1A.0230s0340 N
Thhalv10018927m.g Eutrema salsugineum Thhalv10018927m.g N
Thhalv10028239m.g Eutrema salsugineum Thhalv10028239m.g N