Irx5 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000031737 T212467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx5
M00455_2.00		 Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.867 1.000
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.867 1.000
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.867 1.000
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.867 1.000
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.867 1.000
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.815 0.930
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.815 0.930
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.815 0.930
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.780 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00455_2.00 Homeodomain 17 76

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000034184 Homeodomain 113 172

Links

Other Homeodomain family TFs
Other Mus musculus TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA14G09231 Glycine max GLYMA14G09231 I 0.000
GLYMA17G21573 Glycine max GLYMA17G21573 I 0.000
Pavir.J12143 Panicum virgatum Pavir.J12143 I 0.000
Pavir.Ca01237 Panicum virgatum Pavir.Ca01237 I 0.000
OGLUM03G27730 Oryza glumaepatula OGLUM03G27730 I 0.000
OGLUM05G02640 Oryza glumaepatula OGLUM05G02640 I 0.000
OLONG_013198 Oryza longistaminata OLONG_013198 I 0.000
OMERI05G02570 Oryza meridionalis OMERI05G02570 I 0.000
Cagra.2428s0008 Capsella grandiflora Cagra.2428s0008 N 0.000
Traes_5AL_F6FD8FEFF Triticum aestivum Traes_5AL_F6FD8FEFF N 0.000
Traes_6AS_E0A257EEA Triticum aestivum Traes_6AS_E0A257EEA N 0.000
TRIUR3_21181 Triticum urartu TRIUR3_21181 N 0.000
TRIUR3_25332 Triticum urartu TRIUR3_25332 N 0.000
TRIUR3_26354 Triticum urartu TRIUR3_26354 N 0.000
Pm005303 Prunus mume Pm005303 N 0.000
Cucsa.140430 Cucumis sativus Cucsa.140430 N 0.000
mgf017216m Mimulus guttatus mgf017216m N 0.000
mgf025738m Mimulus guttatus mgf025738m N 0.000
OPUNC09G08950 Oryza punctata OPUNC09G08950 N 0.000
Lus10018724.g Linum usitatissimum Lus10018724.g N 0.000
Lus10036286.g Linum usitatissimum Lus10036286.g N 0.000
LjSGA_050347.1 Lotus japonicus LjSGA_050347.1 N 0.000
PDK_20s1361701g002 Phoenix dactylifera PDK_20s1361701g002 N 0.000
PDK_20s1580651g003 Phoenix dactylifera PDK_20s1580651g003 N 0.000
OLONG_008235 Oryza longistaminata OLONG_008235 N 0.000
F775_14547 Aegilops tauschii F775_14547 N 0.000
F775_20324 Aegilops tauschii F775_20324 N 0.000
GRMZM2G316758 Zea mays GRMZM2G316758 N 0.000
GSMUA_Achr9G11300_001 Musa acuminata GSMUA_Achr9G11300_001 N 0.000
OB02G42630 Oryza brachyantha OB02G42630 N 0.000
OB12G25120 Oryza brachyantha OB12G25120 N 0.000
OBART02G35840 Oryza barthii OBART02G35840 N 0.000
OLONG_003839 Oryza longistaminata OLONG_003839 N 0.000
ORUFI10G19390 Oryza rufipogon ORUFI10G19390 N 0.000
OLONG_016548 Oryza longistaminata OLONG_016548 N 0.000
ONIVA10G20730 Oryza nivara ONIVA10G20730 N 0.000
OPUNC01G09800 Oryza punctata OPUNC01G09800 N 0.000
OPUNC02G33030 Oryza punctata OPUNC02G33030 N 0.000
OPUNC06G04110 Oryza punctata OPUNC06G04110 N 0.000
BGIOSGA009202 Oryza indica BGIOSGA009202 N 0.000
ORGLA03G0340500 Oryza glaberrima ORGLA03G0340500 N 0.000
ORGLA05G0025000 Oryza glaberrima ORGLA05G0025000 N 0.000