ENSPSIG00000014644 (Pelodiscus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPSIG00000014644 T214948_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000016433 Homeodomain 137 193

Links

Other Homeodomain family TFs
Other Pelodiscus sinensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pve_contig_642-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.1 N 0.000
estExt_fgenesh1_kg.C_21051 Phytophthora capsici estExt_fgenesh1_kg.C_21051 N 0.000
estExt_fgenesh1_kg.C_10721 Phytophthora capsici estExt_fgenesh1_kg.C_10721 N 0.000
PYU1_G013874 Pythium ultimum PYU1_G013874 N 0.000
PYU1_G009787 Pythium ultimum PYU1_G009787 N 0.000
PYU1_G007450 Pythium ultimum PYU1_G007450 N 0.000
PITG_20647 Phytophthora infestans PITG_20647 N 0.000
PITG_14513 Phytophthora infestans PITG_14513 N 0.000
PITG_11760 Phytophthora infestans PITG_11760 N 0.000
Physo134017 Phytophthora sojae Physo134017 N 0.000
Physo131272 Phytophthora sojae Physo131272 N 0.000
Phyra95869 Phytophthora ramorum Phyra95869 N 0.000
Phyra73275 Phytophthora ramorum Phyra73275 N 0.000
F443_03190 Phytophthora parasitica F443_03190 N 0.000
maker-piw_contig_207-snap-gene-0.13 Pythium iwayamai maker-piw_contig_207-snap-gene-0.13 N 0.000
maker-pir_contig_85-snap-gene-0.26 Pythium irregulare maker-pir_contig_85-snap-gene-0.26 N 0.000
maker-pir_contig_551-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_551-fgenesh-gene-0.4 N 0.000
maker-pir_contig_320-snap-gene-0.13 Pythium irregulare maker-pir_contig_320-snap-gene-0.13 N 0.000
maker-pag1_scaffold_287-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_287-snap-gene-0.16 N 0.000
HpaG810973 Hyaloperonospora arabidopsidis HpaG810973 N 0.000
fgenesh_scip_prom.46568.8093 Phytophthora kernoviae fgenesh_scip_prom.46568.8093 N 0.000
fgenesh_scip_prom.46568.1669 Phytophthora kernoviae fgenesh_scip_prom.46568.1669 N 0.000
fgenesh_scip_prom.28083.4438 Phytophthora lateralis fgenesh_scip_prom.28083.4438 N 0.000
fgenesh-pir_contig_580-abinit-gene-0.31 Pythium irregulare fgenesh-pir_contig_580-abinit-gene-0.31 N 0.000
F443_18702 Phytophthora parasitica F443_18702 N 0.000