Six6 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000006296 T215354_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008880 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CIMG_03723 Coccidioides immitis CIMG_03723 I 0.000
MCYG_01011 Microsporum canis MCYG_01011 I 0.000
SNOG_14714 Stagonospora nodorum SNOG_14714 I 0.000
A1O1_01019 Capronia coronata A1O1_01019 I 0.000
A1O3_07535 Capronia epimyces A1O3_07535 I 0.000
A1O5_04202 Cladophialophora psammophila A1O5_04202 I 0.000
A1O7_00074 Cladophialophora yegresii A1O7_00074 I 0.000
ACRE_068200 Acremonium chrysogenum ACRE_068200 I 0.000
AUEXF2481DRAFT_64674 Aureobasidium subglaciale AUEXF2481DRAFT_64674 I 0.000
BAUCODRAFT_197012 Baudoinia compniacensis BAUCODRAFT_197012 I 0.000
Bcin10g03880 Botrytis cinerea Bcin10g03880 I 0.000
BDDG_02817 Blastomyces dermatitidis BDDG_02817 I 0.000
BGHDH14_bghG002046000001001 Blumeria graminis BGHDH14_bghG002046000001001 I 0.000
ACLA_039870 Aspergillus clavatus CADACLAG00003667 I 0.000
CADAFLAG00002428 Aspergillus flavus CADAFLAG00002428 I 0.000
AFUA_3G11990 Aspergillus fumigatus CADAFUAG00005328 I 0.000
CADANGAG00002302 Aspergillus niger CADANGAG00002302 I 0.000
ANIA_02852 Aspergillus nidulans CADANIAG00010238 I 0.000
CADAORAG00001356 Aspergillus oryzae CADAORAG00001356 I 0.000
ATEG_04743 Aspergillus terreus CADATEAG00006676 I 0.000
NFIA_065310 Neosartorya fischeri CADNFIAG00006112 I 0.000
CFIO01_13705 Colletotrichum fioriniae CFIO01_13705 I 0.000
CGGC5_1101 Colletotrichum gloeosporioides CGGC5_1101 I 0.000
CH063_05582 Colletotrichum higginsianum CH063_05582 I 0.000
Cob_06492 Colletotrichum orbiculare Cob_06492 I 0.000
COCC4DRAFT_47497 Bipolaris maydis COCC4DRAFT_47497 I 0.000
COCCADRAFT_34914 Bipolaris zeicola COCCADRAFT_34914 I 0.000
COCMIDRAFT_84872 Bipolaris oryzae COCMIDRAFT_84872 I 0.000
COCSADRAFT_174716 Bipolaris sorokiniana COCSADRAFT_174716 I 0.000
COCVIDRAFT_34294 Bipolaris victoriae COCVIDRAFT_34294 I 0.000
CPC735_005650 Coccidioides posadasii CPC735_005650 I 0.000
CPUR_06386 Claviceps purpurea CPUR_06386 I 0.000
CSUB01_04391 Colletotrichum sublineola CSUB01_04391 I 0.000
DOTSEDRAFT_68949 Dothistroma septosporum DOTSEDRAFT_68949 I 0.000
EURHEDRAFT_457145 Aspergillus ruber EURHEDRAFT_457145 I 0.000
F503_04993 Ophiostoma piceae uamh F503_04993 I 0.000
FFUJ_07921 Fusarium fujikuroi FFUJ_07921 I 0.000
FGRRES_02531 Fusarium graminearum FGRRES_02531 I 0.000
FOXG_10560 Fusarium oxysporum FOXG_10560 I 0.000
FPSE_08652 Fusarium pseudograminearum FPSE_08652 I 0.000
FVEG_09208 Fusarium verticillioides FVEG_09208 I 0.000
G647_00084 Cladophialophora carrionii G647_00084 I 0.000
GLRG_02281 Colletotrichum graminicola GLRG_02281 I 0.000
GMDG_03842 Pseudogymnoascus destructans GMDG_03842 I 0.000
GSTUM_00004065001 Tuber melanosporum GSTUM_00004065001 I 0.000
H101_06009 Trichophyton interdigitale H101_06009 I 0.000
H102_08256 Trichophyton rubrum H102_08256 I 0.000
H105_08284 Trichophyton soudanense H105_08284 I 0.000
HCBG_06695 Histoplasma capsulatum HCBG_06695 I 0.000
HMPREF1120_00700 Exophiala dermatitidis HMPREF1120_00700 I 0.000
HMPREF1541_07771 Cyphellophora europaea HMPREF1541_07771 I 0.000
HMPREF1624_02869 Sporothrix schenckii HMPREF1624_02869 I 0.000
LEMA_P018460.1 Leptosphaeria maculans LEMA_P018460.1 I 0.000
M437DRAFT_43351 Aureobasidium melanogenum M437DRAFT_43351 I 0.000
M438DRAFT_374425 Aureobasidium pullulans M438DRAFT_374425 I 0.000
MAC_04093 Metarhizium acridum MAC_04093 I 0.000
MAJ_06390 Metarhizium majus MAJ_06390 I 0.000
MBM_01220 Marssonina brunnea MBM_01220 I 0.000
MBR_05424 Metarhizium brunneum MBR_05424 I 0.000
MCYG_01011 Arthroderma otae MCYG_01011 I 0.000
MGG_05683 Magnaporthe oryzae MGG_05683 I 0.000
MGYG_00975 Microsporum gypseum MGYG_00975 I 0.000
MPH_05518 Macrophomina phaseolina MPH_05518 I 0.000
Mycgr3G66057 Zymoseptoria tritici Mycgr3G66057 I 0.000
NechaG70404 Fusarium solani NechaG70404 I 0.000
OCS_01648 Ophiocordyceps sinensis OCS_01648 I 0.000
PABG_02299 Paracoccidioides brasiliensis PABG_02299 I 0.000
PCH_Pc18g00400 Penicillium rubens PCH_Pc18g00400 I 0.000
PDE_05166 Penicillium oxalicum PDE_05166 I 0.000
PEX1_059620 Penicillium expansum PEX1_059620 I 0.000
PFICI_12992 Pestalotiopsis fici PFICI_12992 I 0.000
PITC_065240 Penicillium italicum PITC_065240 I 0.000
PMAA_023940 Talaromyces marneffei PMAA_023940 I 0.000
PTT_04846 Pyrenophora teres PTT_04846 I 0.000
PV04_02027 Capronia semiimmersa PV04_02027 I 0.000
PV05_10933 Exophiala xenobiotica PV05_10933 I 0.000
PV06_03636 Exophiala oligosperma PV06_03636 I 0.000
PV07_10738 Cladophialophora immunda PV07_10738 I 0.000
PV08_06047 Exophiala spinifera PV08_06047 I 0.000
PV09_07264 Verruconis gallopava PV09_07264 I 0.000
PV10_09014 Exophiala mesophila PV10_09014 I 0.000
PV11_07819 Exophiala sideris PV11_07819 I 0.000
PVAR5_3046 Byssochlamys spectabilis PVAR5_3046 I 0.000
S40285_00491 Stachybotrys chlorohalonata S40285_00491 I 0.000
S40288_00263 Stachybotrys chartarum S40288_00263 I 0.000
SEPMUDRAFT_122857 Sphaerulina musiva SEPMUDRAFT_122857 I 0.000
SETTUDRAFT_167119 Setosphaeria turcica SETTUDRAFT_167119 I 0.000
SNOG_14714 Phaeosphaeria nodorum SNOG_14714 I 0.000
SPBR_02224 Sporothrix brasiliensis SPBR_02224 I 0.000
TEQG_01038 Trichophyton equinum TEQG_01038 I 0.000
TESG_04568 Trichophyton tonsurans TESG_04568 I 0.000
TESG_08566 Trichophyton tonsurans TESG_08566 I 0.000
TRIATDRAFT_145432 Trichoderma atroviride TRIATDRAFT_145432 I 0.000
TRIREDRAFT_48281 Trichoderma reesei TRIREDRAFT_48281 I 0.000
TRIVIDRAFT_82975 Trichoderma virens TRIVIDRAFT_82975 I 0.000
TSTA_032370 Talaromyces stipitatus TSTA_032370 I 0.000
U727_0043393211 Penicillium solitum U727_0043393211 I 0.000
UCRNP2_4088 Neofusicoccum parvum UCRNP2_4088 I 0.000
UREG_07542 Uncinocarpus reesii UREG_07542 I 0.000
VDAG_03724 Verticillium dahliae VDAG_03724 I 0.000
VHEMI02852 Torrubiella hemipterigena VHEMI02852 I 0.000
W97_02588 Coniosporium apollinis W97_02588 I 0.000
X797_009558 Metarhizium robertsii X797_009558 I 0.000
Z517_08868 Fonsecaea pedrosoi Z517_08868 I 0.000
Z518_07968 Rhinocladiella mackenziei Z518_07968 I 0.000
Z519_03481 Cladophialophora bantiana Z519_03481 I 0.000
e_gw1.1.3784.1 Mycosphaerella fijiensis e_gw1.1.3784.1 I 0.000
estExt_Genewise1Plus.C_11405 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_11405 I 0.000
estExt_Genewise1Plus.C_chr_11749 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_11749 I 0.000
estExt_Genewise1Plus.C_sca_20_chr6_4_00971 Nectria haematococca estExt_Genewise1Plus.C_sca_20_chr6_4_00971 I 0.000
estExt_Genewise1.C_11263 Cryphonectria parasitica estExt_Genewise1.C_11263 I 0.000
fgenesh1_pg.00866_#_460 Aspergillus carbonarius fgenesh1_pg.00866_#_460 I 0.000
Pc18g00400 Penicillium chrysogenum Pc18g00400 I 0.000
PMAA_023940 Penicillium marneffei PMAA_023940 I 0.000
A1O5_01219 Cladophialophora psammophila A1O5_01219 N 0.000
A1O9_05871 Exophiala aquamarina A1O9_05871 N 0.000
ARB_07830 Arthroderma benhamiae ARB_07830 N 0.000
BBA_03269 Beauveria bassiana BBA_03269 N 0.000
ACLA_018300 Aspergillus clavatus CADACLAG00002494 N 0.000
L804_04538 Cryptococcus gattii L804_04538 N 0.000
M404DRAFT_86275 Pisolithus tinctorius M404DRAFT_86275 N 0.000
MGU_05483 Metarhizium guizhouense MGU_05483 N 0.000
PMAA_088800 Talaromyces marneffei PMAA_088800 N 0.000
PV07_00510 Cladophialophora immunda PV07_00510 N 0.000
TRV_01300 Trichophyton verrucosum TRV_01300 N 0.000
UV8b_3852 Ustilaginoidea virens UV8b_3852 N 0.000
Z517_01484 Fonsecaea pedrosoi Z517_01484 N 0.000
Z519_08487 Cladophialophora bantiana Z519_08487 N 0.000
PMAA_088800 Penicillium marneffei PMAA_088800 N 0.000