caup (Drosophila melanogaster)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0015919 T217473_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
caup
M06315_2.00		 Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919		 (Direct) (Direct)
caup
M06316_2.00		 Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919		 (Direct) (Direct)
caup
M06519_2.00		 Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.858 0.947
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.858 0.947
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.858 0.947
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.824 0.895
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.806 0.877
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.806 0.877
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.806 0.877
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.806 0.877
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.806 0.877
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.780 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0075641 Homeodomain 227 286

Links

Other Homeodomain family TFs
Other Drosophila melanogaster TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Doc2 Drosophila melanogaster FBgn0035956 D 0.000
Doc3 Drosophila melanogaster FBgn0035954 D 0.000
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D 0.000
TBX2 Takifugu rubripes ENSTRUG00000008297 D 0.000
GE21264 Drosophila yakuba FBgn0238533 I 0.000
AATE019626 Anopheles atroparvus AATE019626 I 0.000
AARA007626 Anopheles arabiensis AARA007626 I 0.000
AALB004781 Anopheles albimanus AALB004781 I 0.000
LCUP005947 Lucilia cuprina LCUP005947 I 0.000
LCUP005946 Lucilia cuprina LCUP005946 I 0.000
LCUP005945 Lucilia cuprina LCUP005945 I 0.000
MESCA005219 Megaselia scalaris MESCA005219 I 0.000
ACUA013605 Anopheles culicifacies ACUA013605 I 0.000
GE20800 Drosophila yakuba FBgn0238094 I 0.000
GE20799 Drosophila yakuba FBgn0238093 I 0.000
GK12353 Drosophila willistoni FBgn0214363 I 0.000
GK12352 Drosophila willistoni FBgn0214362 I 0.000
GK12279 Drosophila willistoni FBgn0214289 I 0.000
GJ11697 Drosophila virilis FBgn0198951 I 0.000
GJ11695 Drosophila virilis FBgn0198949 I 0.000
GD14149 Drosophila simulans FBgn0185837 I 0.000
ACHR005948 Anopheles christyi ACHR005948 I 0.000
ACOM024997 Anopheles coluzzii ACOM024997 I 0.000
GM24895 Drosophila sechellia FBgn0179757 I 0.000
ADIR008855 Anopheles dirus ADIR008855 I 0.000
AEPI008783 Anopheles epiroticus AEPI008783 I 0.000
AFAF003219 Anopheles farauti AFAF003219 I 0.000
AFUN010103 Anopheles funestus AFUN010103 I 0.000
AMEC016175 Anopheles melas AMEC016175 I 0.000
AMEM015129 Anopheles merus AMEM015129 I 0.000
AMIN011562 Anopheles minimus AMIN011562 I 0.000
AQUA010990 Anopheles quadriannulatus AQUA010990 I 0.000
ASIS012852 Anopheles sinensis ASIS012852 I 0.000
ASTEI02809 Anopheles stephensi ASTEI02809 I 0.000
MDOA003812 Musca domestica MDOA003812 I 0.000
MDOA006037 Musca domestica MDOA006037 I 0.000
MDOA015287 Musca domestica MDOA015287 I 0.000
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I 0.000
GF10130 Drosophila ananassae FBgn0087171 I 0.000
GA18721 Drosophila pseudoobscura FBgn0078721 I 0.000
GA18682 Drosophila pseudoobscura FBgn0078682 I 0.000
GA18655 Drosophila pseudoobscura FBgn0078655 I 0.000
Doc1 Drosophila melanogaster FBgn0028789 I 0.000
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I 0.000
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I 0.000
TBX2 Oryzias latipes ENSORLG00000014792 I 0.000
GF24374 Drosophila ananassae FBgn0101368 I 0.000
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I 0.000
CPIJ004922 Culex quinquefasciatus CPIJ004922 I 0.000
AGAP005896 Anopheles gambiae AGAP005896 I 0.000
AGAP005895 Anopheles gambiae AGAP005895 I 0.000
ADAC005019 Anopheles darlingi ADAC005019 I 0.000
AAEL013504 Aedes aegypti AAEL013504 I 0.000
AAEL004174 Aedes aegypti AAEL004174 I 0.000
GD14148 Drosophila simulans FBgn0185836 I 0.000
GF24375 Drosophila ananassae FBgn0101369 I 0.000
GG14368 Drosophila erecta FBgn0106627 I 0.000
GG14369 Drosophila erecta FBgn0106628 I 0.000
GG15041 Drosophila erecta FBgn0107295 I 0.000
GH14955 Drosophila grimshawi FBgn0122430 I 0.000
GH16540 Drosophila grimshawi FBgn0124011 I 0.000
GH16541 Drosophila grimshawi FBgn0124012 I 0.000
GI11482 Drosophila mojavensis FBgn0134242 I 0.000
GI13829 Drosophila mojavensis FBgn0136583 I 0.000
GI13831 Drosophila mojavensis FBgn0136585 I 0.000
GL15033 Drosophila persimilis FBgn0152637 I 0.000
GL15034 Drosophila persimilis FBgn0152638 I 0.000
GL15081 Drosophila persimilis FBgn0152685 I 0.000
CpipJ_CPIJ004922 Culex pipiens CpipJ_CPIJ004922 I 0.000
GM25112 Drosophila sechellia FBgn0179973 I 0.000