LotgiG70529 (Lottia gigantea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 LotgiG70529 T220162_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.799 0.889
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.768 0.889
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.768 0.889
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.768 0.889
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.768 0.889
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.768 0.889
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.768 0.889
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.768 0.870
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.768 0.870
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.768 0.870
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.768 0.870
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.768 0.870
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.768 0.870
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.768 0.870
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP70529 Homeodomain 1 57

Links

Other Homeodomain family TFs
Other Lottia gigantea TFs

393 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NTL9 Arabidopsis thaliana AT4G35580 D 0.000
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I 0.000
PK02019.1 Cannabis sativa PK02019.1 I 0.000
Carubv10007613m.g Capsella rubella Carubv10007613m.g I 0.000
Carubv10008529m.g Capsella rubella Carubv10008529m.g I 0.000
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I 0.000
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I 0.000
evm.TU.supercontig_37.112 Carica papaya evm.TU.supercontig_37.112 I 0.000
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I 0.000
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I 0.000
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I 0.000
Lus10008285.g Linum usitatissimum Lus10008285.g I 0.000
Lus10010148.g Linum usitatissimum Lus10010148.g I 0.000
Lus10033251.g Linum usitatissimum Lus10033251.g I 0.000
MDP0000266908 Malus domestica MDP0000266908 I 0.000
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I 0.000
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I 0.000
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I 0.000
NAC014 Arabidopsis thaliana AT1G33060 I 0.000
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I 0.000
Bo5g086780 Brassica oleracea Bo5g086780 I 0.000
Bra010193 Brassica rapa Bra010193 I 0.000
ANAC014 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002639 I 0.000
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I 0.000
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I 0.000
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I 0.000
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I 0.000
TCM_015584 Theobroma cacao TCM_015584 I 0.000
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I 0.000
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I 0.000
Pm029581 Prunus mume Pm029581 I 0.000
30068.m002619 Ricinus communis 30068.m002619 I 0.000
mgf022344m Mimulus guttatus mgf022344m I 0.000
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I 0.000
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I 0.000
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I 0.000
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I 0.000