MTR_4g088070 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_4g088070 T220815_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.652 0.596
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30946 Homeodomain 26 87

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WOX11 Arabidopsis thaliana AT3G03660 D 0.652
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.684
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.653
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.684
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.653
WOX9 Arabidopsis thaliana AT2G33880 I 0.684
WOX12 Arabidopsis thaliana AT5G17810 I 0.653
WOX8 Arabidopsis thaliana AT5G45980 I 0.692
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.706
WOX6 Oryza indica BGIOSGA010824 I 0.653
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.706
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.653
WOX10 Oryza indica BGIOSGA027391 I 0.653
Bo11772s010 Brassica oleracea Bo11772s010 I 0.653
Bo1g153650 Brassica oleracea Bo1g153650 I 0.653
Bo2g013980 Brassica oleracea Bo2g013980 I 0.653
Bo2g062660 Brassica oleracea Bo2g062660 I 0.653
Bo2g127670 Brassica oleracea Bo2g127670 I 0.692
Bo3g027500 Brassica oleracea Bo3g027500 I 0.684
Bo4g041330 Brassica oleracea Bo4g041330 I 0.684
Bo5g148780 Brassica oleracea Bo5g148780 I 0.653
Bo9g070070 Brassica oleracea Bo9g070070 I 0.613
Bo9g159820 Brassica oleracea Bo9g159820 I 0.653
Bra002108 Brassica rapa Bra002108 I 0.653
Bra005464 Brassica rapa Bra005464 I 0.684
Bra017448 Brassica rapa Bra017448 I 0.613
Bra022008 Brassica rapa Bra022008 I 0.692
Bra022960 Brassica rapa Bra022960 I 0.684
Bra023638 Brassica rapa Bra023638 I 0.653
Bra031980 Brassica rapa Bra031980 I 0.653
Bra036446 Brassica rapa Bra036446 I 0.653
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.653
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.653
F775_11947 Aegilops tauschii F775_11947 I 0.653
F775_22811 Aegilops tauschii F775_22811 I 0.653
F775_23099 Aegilops tauschii F775_23099 I 0.660
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.652
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.653
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.684
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.684
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.684
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.684
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.653
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.694
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.694
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.653
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.653
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.653
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.714
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.649
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.653
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.608
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.653
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.653
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.653
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.706
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.653
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.706
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.706
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.653
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.653
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.621
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.653
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.653
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.660
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.684
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.660
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.653
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.684
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.653
OB01G35000 Oryza brachyantha OB01G35000 I 0.706
OB08G17020 Oryza brachyantha OB08G17020 I 0.675
OBART01G25820 Oryza barthii OBART01G25820 I 0.706
OBART03G15820 Oryza barthii OBART03G15820 I 0.653
OBART05G25900 Oryza barthii OBART05G25900 I 0.706
OBART07G26670 Oryza barthii OBART07G26670 I 0.653
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.706
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.653
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.706
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.653
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.653
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.706
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.653
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.706
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.706
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.653
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.653
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.653
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.706
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.653
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.706
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.653
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.706
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.653
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.653
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.653
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.706
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.653
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.653
OS01G0667450 Oryza sativa OS01G0667450 I 0.706
OS03G0325600 Oryza sativa OS03G0325600 I 0.653
OS05G0564500 Oryza sativa OS05G0564500 I 0.706
WOX11 Oryza sativa OS07G0684900 I 0.653
WOX10 Oryza sativa OS08G0242400 I 0.653
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.672
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.653
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.684
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.684
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.653
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.653
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.684
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.666
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.653
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.653
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.653
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.714
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.692
Si004249m.g Setaria italica Si004249m.g I 0.694
Si015065m.g Setaria italica Si015065m.g I 0.653
Si025013m.g Setaria italica Si025013m.g I 0.714
Si030836m.g Setaria italica Si030836m.g I 0.653
Si039112m.g Setaria italica Si039112m.g I 0.653
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.672
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.653
TCM_025805 Theobroma cacao TCM_025805 I 0.653
TCM_029776 Theobroma cacao TCM_029776 I 0.684
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.653
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.653
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.660
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.653
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.653
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.653
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.633
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.653
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.653
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.684
Ca_00357 Cicer arietinum Ca_00357 I 0.684
Ca_06365 Cicer arietinum Ca_06365 I 0.684
Ca_08180 Cicer arietinum Ca_08180 I 0.653
Ca_19701 Cicer arietinum Ca_19701 I 0.653
Cla009819 Citrullus lanatus Cla009819 I 0.706
Pm010370 Prunus mume Pm010370 I 0.684
Pm025458 Prunus mume Pm025458 I 0.686
29900.m001555 Ricinus communis 29900.m001555 I 0.684
30072.m000927 Ricinus communis 30072.m000927 I 0.653
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.653
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.684
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.684
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.661
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.706
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.653
mgf001579m Mimulus guttatus mgf001579m I 0.682
mgf016673m Mimulus guttatus mgf016673m I 0.653
mgf017527m Mimulus guttatus mgf017527m I 0.649
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.653
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.684
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.653
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.684
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.692
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.684
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.692
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.653
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.653
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.653
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.653
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.684
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.692
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.684
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.653
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.653
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.683
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.684
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.653
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.677
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.684
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.666
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.653
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.684
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.684
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.653
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.684
MDP0000136426 Malus domestica MDP0000136426 I 0.666
MDP0000232004 Malus domestica MDP0000232004 I 0.684
MDP0000524885 Malus domestica MDP0000524885 I 0.666
MDP0000729328 Malus domestica MDP0000729328 I 0.684
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.684
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.653
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.653
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.714
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.694
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.653
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.653
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.653
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.653
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.684
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.684
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.653
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.653
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.671
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.653
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.684
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.653
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.684
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.653
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.653
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.653