PGSC0003DMG400027030 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400027030 T222212_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.851 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400069528 Homeodomain 18 79
PGSC0003DMT400069529 Homeodomain 18 79

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400009304 Solanum tuberosum PGSC0003DMG400009304 I
Carubv10004940m.g Capsella rubella Carubv10004940m.g I
Gorai.003G021300 Gossypium raimondii Gorai.003G021300 I
BGIOSGA028509 Oryza indica BGIOSGA028509 N
Bra011042 Brassica rapa Bra011042 N
F775_00616 Aegilops tauschii F775_00616 N
GSMUA_Achr6G20070_001 Musa acuminata GSMUA_Achr6G20070_001 N
OMERI02G34900 Oryza meridionalis OMERI02G34900 N
OPUNC02G34240 Oryza punctata OPUNC02G34240 N
PRUPE_ppa025217mg Prunus persica PRUPE_ppa025217mg N
Carubv10012777m.g Capsella rubella Carubv10012777m.g N