Aquca_009_01021 (Aquilegia coerulea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Aquca_009_01021 T228031_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.713 0.684
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.713 0.684
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.709 0.719
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.709 0.719
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.709 0.719
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.696 0.649
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.693 0.667
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.693 0.667
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.631 0.561
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.631 0.561
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.630 0.474
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.604 0.702
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.604 0.702
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.604 0.702
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.604 0.702
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.604 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_009_01021.1 Homeodomain 72 128
Aquca_009_01021.2 Homeodomain 72 128

Links

Other Homeodomain family TFs
Other Aquilegia coerulea TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC002 Arabidopsis thaliana AT1G01720 D 0.000
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.000
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.000
Traes_7BL_8A5D12EE1 Triticum aestivum Traes_7BL_8A5D12EE1 I 0.000
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.000
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.000
mgf015836m Mimulus guttatus mgf015836m I 0.000
mgf002365m Mimulus guttatus mgf002365m I 0.000
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.000
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.000
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.000
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.000
cassava23439.valid.m1 Manihot esculenta cassava23439.valid.m1 I 0.000
Cla011742 Citrullus lanatus Cla011742 I 0.000
Ca_13571 Cicer arietinum Ca_13571 I 0.000
TRIUR3_29260 Triticum urartu TRIUR3_29260 I 0.000
Traes_7DL_D05DA373C Triticum aestivum Traes_7DL_D05DA373C I 0.000
NAC026 Arabidopsis thaliana AT1G62700 I 0.000
Cagra.27691s0001 Capsella grandiflora Cagra.27691s0001 I 0.000
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.000
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.000
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.000
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I 0.000
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.000
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.000
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.000
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.000
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.000
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.000
SapurV1A.0958s0170 Salix purpurea SapurV1A.0958s0170 I 0.000
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.000
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.000
Thhalv10023502m.g Eutrema salsugineum Thhalv10023502m.g I 0.000
PK05686.1 Cannabis sativa PK05686.1 I 0.000
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.000
Bo1g138800 Brassica oleracea Bo1g138800 I 0.000
Bo3g065200 Brassica oleracea Bo3g065200 I 0.000
Bo5g001100 Brassica oleracea Bo5g001100 I 0.000
Bra033239 Brassica rapa Bra033239 I 0.000
Bra039353 Brassica rapa Bra039353 I 0.000
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.000
F775_11764 Aegilops tauschii F775_11764 I 0.000
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.000
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.000
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.000
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.000
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.000
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.000
LPERR11G01300 Leersia perrieri LPERR11G01300 I 0.000
MLOC_37364 Hordeum vulgare MLOC_37364 I 0.000
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.000
Si036303m.g Setaria italica Si036303m.g I 0.000
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.000
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.000
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.000
POPTR_0005s10610 Populus trichocarpa POPTR_0005s10610 I 0.000
MTR_2g068920 Medicago truncatula MTR_2g068920 I 0.000
MTR_2g068880 Medicago truncatula MTR_2g068880 I 0.000
LPERR12G01440 Leersia perrieri LPERR12G01440 I 0.000
Cucsa.119310 Cucumis sativus Cucsa.119310 N 0.000
F775_22671 Aegilops tauschii F775_22671 N 0.000
F775_22440 Aegilops tauschii F775_22440 N 0.000
Cla007018 Citrullus lanatus Cla007018 N 0.000
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.000
Bra037283 Brassica rapa Bra037283 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
Bo9g024360 Brassica oleracea Bo9g024360 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000