Carubv10027735m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10027735m.g T228356_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.689 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027735m Homeodomain 52 113

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WOX11 Arabidopsis thaliana AT3G03660 D 0.689
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.818
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.690
WOX2 Arabidopsis lyrata Al_scaffold_0008_2427 I 0.607
AMTR_s00012p00149750 Amborella trichopoda AMTR_s00012p00149750 I 0.607
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.818
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.690
AMTR_s00405p00009920 Amborella trichopoda AMTR_s00405p00009920 I 0.599
WOX6 Arabidopsis thaliana AT2G01500 I 0.603
WOX9 Arabidopsis thaliana AT2G33880 I 0.818
WOX12 Arabidopsis thaliana AT5G17810 I 0.690
WOX8 Arabidopsis thaliana AT5G45980 I 0.862
WOX2 Arabidopsis thaliana AT5G59340 I 0.607
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.796
WOX6 Oryza indica BGIOSGA010824 I 0.690
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.796
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.690
WOX10 Oryza indica BGIOSGA027391 I 0.690
Bo11772s010 Brassica oleracea Bo11772s010 I 0.690
Bo1g153650 Brassica oleracea Bo1g153650 I 0.690
Bo2g013980 Brassica oleracea Bo2g013980 I 0.690
Bo2g026810 Brassica oleracea Bo2g026810 I 0.607
Bo2g062660 Brassica oleracea Bo2g062660 I 0.690
Bo2g127670 Brassica oleracea Bo2g127670 I 0.867
Bo3g027500 Brassica oleracea Bo3g027500 I 0.818
Bo4g041330 Brassica oleracea Bo4g041330 I 0.818
Bo5g148780 Brassica oleracea Bo5g148780 I 0.690
Bo8g106350 Brassica oleracea Bo8g106350 I 0.634
Bo9g070070 Brassica oleracea Bo9g070070 I 0.675
Bo9g138280 Brassica oleracea Bo9g138280 I 0.615
Bo9g159820 Brassica oleracea Bo9g159820 I 0.690
Bra002108 Brassica rapa Bra002108 I 0.690
Bra005464 Brassica rapa Bra005464 I 0.818
Bra017448 Brassica rapa Bra017448 I 0.675
Bra022008 Brassica rapa Bra022008 I 0.867
Bra022960 Brassica rapa Bra022960 I 0.796
Bra023638 Brassica rapa Bra023638 I 0.690
Bra026791 Brassica rapa Bra026791 I 0.634
Bra031980 Brassica rapa Bra031980 I 0.690
Bra036446 Brassica rapa Bra036446 I 0.690
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.690
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.690
F775_11947 Aegilops tauschii F775_11947 I 0.690
F775_22811 Aegilops tauschii F775_22811 I 0.690
F775_23099 Aegilops tauschii F775_23099 I 0.775
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.689
PFS2 Arabidopsis lyrata fgenesh2_kg.5__60__AT2G01500.1 I 0.603
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.690
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.818
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.818
GLYMA11G14940 Glycine max GLYMA11G14940 I 0.607
GLYMA12G06895 Glycine max GLYMA12G06895 I 0.607
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.818
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.818
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.690
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.808
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.808
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.690
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.690
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.690
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.784
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.686
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.690
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.645
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.690
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.690
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.690
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.796
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.690
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.796
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.796
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.690
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.690
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.723
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.690
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.690
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.770
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.818
MTR_4g063735 Medicago truncatula MTR_4g063735 I 0.607
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.692
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.661
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.690
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.796
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.690
OB01G35000 Oryza brachyantha OB01G35000 I 0.796
OB08G17020 Oryza brachyantha OB08G17020 I 0.690
OBART01G25820 Oryza barthii OBART01G25820 I 0.796
OBART03G15820 Oryza barthii OBART03G15820 I 0.690
OBART05G25900 Oryza barthii OBART05G25900 I 0.796
OBART07G26670 Oryza barthii OBART07G26670 I 0.690
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.796
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.690
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.796
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.690
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.690
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.796
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.690
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.796
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.796
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.690
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.690
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.690
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.796
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.690
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.796
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.690
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.796
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.690
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.690
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.690
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.796
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.690
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.690
OS01G0667450 Oryza sativa OS01G0667450 I 0.796
OS03G0325600 Oryza sativa OS03G0325600 I 0.690
OS05G0564500 Oryza sativa OS05G0564500 I 0.796
WOX11 Oryza sativa OS07G0684900 I 0.690
WOX10 Oryza sativa OS08G0242400 I 0.690
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.818
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.703
PGSC0003DMG400030316 Solanum tuberosum PGSC0003DMG400030316 I 0.607
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.818
POPTR_0007s14130 Populus trichocarpa POPTR_0007s14130 I 0.608
POPTR_0009s03460 Populus trichocarpa POPTR_0009s03460 I 0.607
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.818
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.690
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.690
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.818
PRUPE_ppa021063mg Prunus persica PRUPE_ppa021063mg I 0.602
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.690
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.690
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.690
Sb06g030700 Sorghum bicolor Sb06g030700 I 0.600
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.690
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.784
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.867
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.608
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.608
Si004249m.g Setaria italica Si004249m.g I 0.803
Si015065m.g Setaria italica Si015065m.g I 0.690
Si025013m.g Setaria italica Si025013m.g I 0.784
Si030836m.g Setaria italica Si030836m.g I 0.690
Si039112m.g Setaria italica Si039112m.g I 0.690
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.818
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.703
Solyc06g076000.1 Solanum lycopersicum Solyc06g076000.1 I 0.607
TCM_025805 Theobroma cacao TCM_025805 I 0.690
TCM_029776 Theobroma cacao TCM_029776 I 0.818
TCM_041866 Theobroma cacao TCM_041866 I 0.607
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.690
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.690
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.770
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.690
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.690
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.690
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.670
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.690
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.690
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.818
WOX4 Vitis vinifera VIT_18s0001g10160 I 0.599
Ca_00357 Cicer arietinum Ca_00357 I 0.818
Ca_06365 Cicer arietinum Ca_06365 I 0.818
Ca_08180 Cicer arietinum Ca_08180 I 0.690
Ca_16691 Cicer arietinum Ca_16691 I 0.607
Ca_19701 Cicer arietinum Ca_19701 I 0.690
Cla008386 Citrullus lanatus Cla008386 I 0.607
Cla009819 Citrullus lanatus Cla009819 I 0.796
Pm010370 Prunus mume Pm010370 I 0.818
Pm025458 Prunus mume Pm025458 I 0.710
29876.m000245 Ricinus communis 29876.m000245 I 0.607
29900.m001555 Ricinus communis 29900.m001555 I 0.818
30072.m000927 Ricinus communis 30072.m000927 I 0.690
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.690
cassava38630.m1 Manihot esculenta cassava38630.m1 I 0.607
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.818
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.818
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.711
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.796
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.690
mgf001579m Mimulus guttatus mgf001579m I 0.817
mgf016673m Mimulus guttatus mgf016673m I 0.690
mgf017527m Mimulus guttatus mgf017527m I 0.696
mgf023275m Mimulus guttatus mgf023275m I 0.607
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.690
Aquca_027_00327 Aquilegia coerulea Aquca_027_00327 I 0.607
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.818
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.690
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.818
Bostr.26833s0310 Boechera stricta Bostr.26833s0310 I 0.607
Bostr.7903s0027 Boechera stricta Bostr.7903s0027 I 0.603
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.844
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.818
Cagra.1317s0079 Capsella grandiflora Cagra.1317s0079 I 0.607
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.867
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.690
Cagra.2235s0008 Capsella grandiflora Cagra.2235s0008 I 0.603
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.690
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.690
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.690
Carubv10018421m.g Capsella rubella Carubv10018421m.g I 0.603
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.818
Carubv10028333m.g Capsella rubella Carubv10028333m.g I 0.607
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.818
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.690
Ciclev10027270m.g Citrus clementina Ciclev10027270m.g I 0.603
Ciclev10029815m.g Citrus clementina Ciclev10029815m.g I 0.607
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.690
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.818
evm.TU.supercontig_190.1 Carica papaya evm.TU.supercontig_190.1 I 0.607
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.818
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.690
gene14133-v1.0-hybrid Fragaria vesca gene14133-v1.0-hybrid I 0.602
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.786
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.818
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.690
Gorai.001G108900 Gossypium raimondii Gorai.001G108900 I 0.607
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.690
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.818
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.796
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.690
Gorai.013G264200 Gossypium raimondii Gorai.013G264200 I 0.607
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.818
MDP0000136426 Malus domestica MDP0000136426 I 0.690
MDP0000232004 Malus domestica MDP0000232004 I 0.818
MDP0000524885 Malus domestica MDP0000524885 I 0.690
MDP0000729328 Malus domestica MDP0000729328 I 0.818
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.818
orange1.1g046372m.g Citrus sinensis orange1.1g046372m.g I 0.603
orange1.1g046813m.g Citrus sinensis orange1.1g046813m.g I 0.607
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.690
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.690
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.784
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.808
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.690
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.690
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.622
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.690
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.690
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.818
SapurV1A.0040s0170 Salix purpurea SapurV1A.0040s0170 I 0.607
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.818
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.690
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.690
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.846
Thhalv10001174m.g Eutrema salsugineum Thhalv10001174m.g I 0.603
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.634
Thhalv10014457m.g Eutrema salsugineum Thhalv10014457m.g I 0.607
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.690
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.818
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.690
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.818
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.690
LjSGA_080218.1 Lotus japonicus LjSGA_080218.1 I 0.607
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.690
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.634
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.723
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.658
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.658
OS07G0533201 Oryza sativa OS07G0533201 N 0.658
OSTLU_27102 Ostreococcus lucimarinus OSTLU_27102 N 0.606