MDP0000136426 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000136426 T228983_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.839 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000136426 Homeodomain 27 88

Links

Other Homeodomain family TFs
Other Malus domestica TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WOX11 Arabidopsis thaliana AT3G03660 D 0.839
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.726
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.832
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.726
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.852
WOX9 Arabidopsis thaliana AT2G33880 I 0.726
WOX12 Arabidopsis thaliana AT5G17810 I 0.832
WOX8 Arabidopsis thaliana AT5G45980 I 0.685
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.726
WOX6 Oryza indica BGIOSGA010824 I 0.852
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.710
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.852
WOX10 Oryza indica BGIOSGA027391 I 0.820
Bo11772s010 Brassica oleracea Bo11772s010 I 0.808
Bo1g153650 Brassica oleracea Bo1g153650 I 0.840
Bo2g013980 Brassica oleracea Bo2g013980 I 0.808
Bo2g062660 Brassica oleracea Bo2g062660 I 0.808
Bo2g127670 Brassica oleracea Bo2g127670 I 0.690
Bo3g027500 Brassica oleracea Bo3g027500 I 0.726
Bo4g041330 Brassica oleracea Bo4g041330 I 0.726
Bo5g148780 Brassica oleracea Bo5g148780 I 0.840
Bo8g106350 Brassica oleracea Bo8g106350 I 0.601
Bo9g070070 Brassica oleracea Bo9g070070 I 0.642
Bo9g159820 Brassica oleracea Bo9g159820 I 0.832
Bra002108 Brassica rapa Bra002108 I 0.832
Bra005464 Brassica rapa Bra005464 I 0.726
Bra017448 Brassica rapa Bra017448 I 0.642
Bra022008 Brassica rapa Bra022008 I 0.690
Bra022960 Brassica rapa Bra022960 I 0.726
Bra023638 Brassica rapa Bra023638 I 0.808
Bra026791 Brassica rapa Bra026791 I 0.601
Bra031980 Brassica rapa Bra031980 I 0.840
Bra036446 Brassica rapa Bra036446 I 0.840
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.852
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.820
F775_11947 Aegilops tauschii F775_11947 I 0.820
F775_22811 Aegilops tauschii F775_22811 I 0.852
F775_23099 Aegilops tauschii F775_23099 I 0.710
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.839
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.852
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.726
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.726
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.726
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.726
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.852
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.726
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.726
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.852
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.820
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.820
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.743
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.808
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.854
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.807
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.814
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.854
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.845
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.726
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.843
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.726
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.726
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.852
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.852
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.819
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.852
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.820
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.722
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.726
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.666
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.683
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.852
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.726
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.852
OB01G35000 Oryza brachyantha OB01G35000 I 0.726
OB08G17020 Oryza brachyantha OB08G17020 I 0.798
OB10G14840 Oryza brachyantha OB10G14840 I 0.756
OBART01G25820 Oryza barthii OBART01G25820 I 0.726
OBART03G15820 Oryza barthii OBART03G15820 I 0.852
OBART05G25900 Oryza barthii OBART05G25900 I 0.710
OBART07G26670 Oryza barthii OBART07G26670 I 0.852
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.726
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.852
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.710
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.852
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.820
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.726
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.852
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.726
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.710
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.852
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.820
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.852
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.710
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.852
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.726
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.852
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.710
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.852
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.820
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.852
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.710
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.852
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.820
OS01G0667450 Oryza sativa OS01G0667450 I 0.726
OS03G0325600 Oryza sativa OS03G0325600 I 0.852
OS05G0564500 Oryza sativa OS05G0564500 I 0.710
WOX11 Oryza sativa OS07G0684900 I 0.852
WOX10 Oryza sativa OS08G0242400 I 0.820
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.726
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.838
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.726
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.726
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.854
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.854
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.726
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.865
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.852
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.852
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.820
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.743
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.690
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.651
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.651
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.600
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.600
Si004249m.g Setaria italica Si004249m.g I 0.722
Si015065m.g Setaria italica Si015065m.g I 0.820
Si025013m.g Setaria italica Si025013m.g I 0.743
Si030836m.g Setaria italica Si030836m.g I 0.852
Si039112m.g Setaria italica Si039112m.g I 0.852
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.726
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.838
TCM_025805 Theobroma cacao TCM_025805 I 0.854
TCM_029776 Theobroma cacao TCM_029776 I 0.726
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.852
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.852
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.722
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.820
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.852
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.852
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.831
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.820
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.852
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.726
Ca_00357 Cicer arietinum Ca_00357 I 0.726
Ca_06365 Cicer arietinum Ca_06365 I 0.726
Ca_08180 Cicer arietinum Ca_08180 I 0.852
Ca_19701 Cicer arietinum Ca_19701 I 0.852
Cla009819 Citrullus lanatus Cla009819 I 0.726
Pm010370 Prunus mume Pm010370 I 0.726
Pm025458 Prunus mume Pm025458 I 0.844
29900.m001555 Ricinus communis 29900.m001555 I 0.726
30072.m000927 Ricinus communis 30072.m000927 I 0.854
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.854
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.726
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.726
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.814
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.726
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.854
mgf001579m Mimulus guttatus mgf001579m I 0.726
mgf016673m Mimulus guttatus mgf016673m I 0.854
mgf017527m Mimulus guttatus mgf017527m I 0.793
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.854
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.726
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.840
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.726
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.690
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.726
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.690
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.840
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.840
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.840
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.840
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.726
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.690
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.726
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.854
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.852
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.726
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.726
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.852
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.738
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.726
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.867
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.854
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.726
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.726
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.854
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.726
MDP0000232004 Malus domestica MDP0000232004 I 0.726
MDP0000524885 Malus domestica MDP0000524885 I 0.867
MDP0000729328 Malus domestica MDP0000729328 I 0.726
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.726
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.854
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.852
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.743
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.726
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.820
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.852
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.768
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.852
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.812
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.726
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.726
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.854
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.854
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.670
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.601
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.840
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.726
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.840
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.726
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.852
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.852
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.725
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.621