MDP0000322550 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000322550 T229075_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.834 0.842
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.834 0.842
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.834 0.842
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.809 0.772
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.809 0.772
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.800 0.754
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.784 0.737
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.784 0.737
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.778 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.778 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.778 0.789
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.778 0.789
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.772 0.772
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.772 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.769 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000322550 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Malus domestica TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bm7659 Brugia malayi Bm7659 I 0.000
TCNE_0001032701 Toxocara canis TCNE_0001032701 I 0.000
SMUV_0000807101 Syphacia muris SMUV_0000807101 I 0.000
OFLC_0001047301 Onchocerca flexuosa OFLC_0001047301 I 0.000
nRc.2.0.1.g39853 Romanomermis culicivorax nRc.2.0.1.g39853 I 0.000
nOo.2.0.1.g12948 Onchocerca ochengi nOo.2.0.1.g12948 I 0.000
nLs.2.1.2.g06746 Litomosoides sigmodontis nLs.2.1.2.g06746 I 0.000
nDi.2.2.2.g05388 Dirofilaria immitis nDi.2.2.2.g05388 I 0.000
nAv.1.0.1.g02718 Acanthocheilonema viteae nAv.1.0.1.g02718 I 0.000
MhA1_Contig410.frz3.gene15 Meloidogyne hapla MhA1_Contig410.frz3.gene15 I 0.000
L898_g32383 Steinernema monticolum L898_g32383 I 0.000
L893_g18810 Steinernema glaseri L893_g18810 I 0.000
L892_g4417 Steinernema scapterisci L892_g4417 I 0.000
L889_g1991 Steinernema feltiae L889_g1991 I 0.000
HPBE_0002427601 Heligmosomoides bakeri HPBE_0002427601 I 0.000
HCOI01452900 Haemonchus contortus HCOI01452900 I 0.000
EVEC_0001120201 Enterobius vermicularis EVEC_0001120201 I 0.000
EEL_0000990501 Elaeophora elaphi EEL_0000990501 I 0.000
DICVIV_06041 Dictyocaulus viviparus DICVIV_06041 I 0.000
ASU_05356 Ascaris suum ASU_05356 I 0.000
ASIM_0001221201 Anisakis simplex ASIM_0001221201 I 0.000
ANCDUO_02770 Ancylostoma duodenale ANCDUO_02770 I 0.000
ANCCAN_03078 Ancylostoma caninum ANCCAN_03078 I 0.000
ACOC_0000978701 Angiostrongylus costaricensis ACOC_0000978701 I 0.000
ACAC_0000812601 Angiostrongylus cantonensis ACAC_0000812601 I 0.000
WBGene00247194 Onchocerca volvulus WBGene00247194 I 0.000
LOAG_08303 Loa loa LOAG_08303 I 0.000
WUBG_02198 Wuchereria bancrofti WUBG_02198 I 0.000
GPLIN_000497200 Globodera pallida GPLIN_000497200 N 0.000
EFV49710 Trichinella spiralis EFV49710 N 0.000
EFV49709 Trichinella spiralis EFV49709 N 0.000