CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00004995001
(
Oikopleura dioica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
SNAPOd2T00004995001
T230338_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00004995001
Homeodomain
143
173
RKKRVPYSRTQLLELEKEFRFNQYGSQTRTC
Links
Other
Homeodomain
family TFs
Other
Oikopleura dioica
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PITX1
Homo sapiens
ENSG00000069011
D
0.641
CRX
Homo sapiens
ENSG00000105392
D
0.631
DLX1
Homo sapiens
ENSG00000144355
D
0.612
Pitx1
Mus musculus
ENSMUSG00000021506
D
0.637
Otx2
Mus musculus
ENSMUSG00000021848
D
0.645
Pitx3
Mus musculus
ENSMUSG00000025229
D
0.641
Crx
Mus musculus
ENSMUSG00000041578
D
0.650
scro
Drosophila melanogaster
FBgn0028993
D
0.700
ACEP26487
Atta cephalotes
ACEP26487
I
0.641
ADAC003417
Anopheles darlingi
ADAC003417
I
0.612
CapteG187461
Capitella teleta
CapteG187461
I
0.616
CJA38412
Caenorhabditis japonica
CJA38412
I
0.612
ENSAPLG00000000623
Anas platyrhynchos
ENSAPLG00000000623
I
0.615
ENSCHOG00000002762
Choloepus hoffmanni
ENSCHOG00000002762
I
0.612
ENSCHOG00000002853
Choloepus hoffmanni
ENSCHOG00000002853
I
0.612
ENSCHOG00000004334
Choloepus hoffmanni
ENSCHOG00000004334
I
0.612
DLX1
Choloepus hoffmanni
ENSCHOG00000006718
I
0.612
ENSCING00000013809
Ciona intestinalis
ENSCING00000013809
I
0.641
ENSECAG00000023678
Equus caballus
ENSECAG00000023678
I
0.738
HOXB3
Echinops telfairi
ENSETEG00000007761
I
0.614
DLX1
Echinops telfairi
ENSETEG00000017573
I
0.612
ENSLOCG00000004905
Lepisosteus oculatus
ENSLOCG00000004905
I
0.601
ENSMEUG00000002781
Macropus eugenii
ENSMEUG00000002781
I
0.641
ENSMEUG00000012817
Macropus eugenii
ENSMEUG00000012817
I
0.612
ENSMGAG00000010010
Meleagris gallopavo
ENSMGAG00000010010
I
0.612
ENSMICG00000002512
Microcebus murinus
ENSMICG00000002512
I
0.629
ENSMICG00000004221
Microcebus murinus
ENSMICG00000004221
I
0.635
ENSMLUG00000025271
Myotis lucifugus
ENSMLUG00000025271
I
0.612
Rhox9
Mus musculus
ENSMUSG00000068048
I
0.635
ENSMUSG00000097436
Mus musculus
ENSMUSG00000097436
I
0.635
DLX5
Ochotona princeps
ENSOPRG00000001891
I
0.612
DLX1
Procavia capensis
ENSPCAG00000008892
I
0.612
ENSPFOG00000024055
Poecilia formosa
ENSPFOG00000024055
I
0.600
ENSPMAG00000010239
Petromyzon marinus
ENSPMAG00000010239
I
0.605
BARX2
Tupaia belangeri
ENSTBEG00000000641
I
0.641
ENSTBEG00000005238
Tupaia belangeri
ENSTBEG00000005238
I
0.607
ENSTGUG00000004229
Taeniopygia guttata
ENSTGUG00000004229
I
0.645
BARX2
Vicugna pacos
ENSVPAG00000010480
I
0.641
GH24924
Drosophila grimshawi
FBgn0132379
I
0.645
GB40331
Apis mellifera
GB40331
I
0.641
GB42226
Apis mellifera
GB42226
I
0.641
HMEL006348
Heliconius melpomene
HMEL006348
I
0.675
HMEL008500
Heliconius melpomene
HMEL008500
I
0.612
ISCW005275
Ixodes scapularis
ISCW005275
I
0.620
ISCW017713
Ixodes scapularis
ISCW017713
I
0.641
ISCW020504
Ixodes scapularis
ISCW020504
I
0.612
MCINX001506
Melitaea cinxia
MCINX001506
I
0.603
MESCA002384
Megaselia scalaris
MESCA002384
I
0.616
MESCA003695
Megaselia scalaris
MESCA003695
I
0.645
MESCA012524
Megaselia scalaris
MESCA012524
I
0.635
ML145813a
Mnemiopsis leidyi
ML145813a
I
0.636
PPA25532
Pristionchus pacificus
PPA25532
I
0.612
RPRC011667
Rhodnius prolixus
RPRC011667
I
0.637
SINV23302
Solenopsis invicta
SINV23302
I
0.641
Smp_150810
Schistosoma mansoni
Smp_150810
I
0.635
Afo_R006907
Aptenodytes forsteri
Afo_R006907
I
0.679
Alligator_sinensis_CCG007400.1
Alligator sinensis
Alligator_sinensis_CCG007400.1
I
0.612
Alligator_sinensis_CCG019716.1
Alligator sinensis
Alligator_sinensis_CCG019716.1
I
0.607
Myotis_brandtii_SLC6A7_10034750
Myotis brandtii
Myotis_brandtii_SLC6A7_10034750
I
0.670
Ogr00063
Ophisaurus gracilis
Ogr00063
I
0.670
30202.m000250
Ricinus communis
30202.m000250
I
0.603
e_gw.814.10.1
Branchiostoma floridae
e_gw.814.10.1
I
0.641
Ocbimv22038354m.g
Octopus bimaculoides
Ocbimv22038354m.g
I
0.612
Sakowv30000867m.g
Saccoglossus kowalevskii
Sakowv30000867m.g
I
0.600
CLEC003990
Cimex lectularius
CLEC003990
I
0.612
CLEC007143
Cimex lectularius
CLEC007143
I
0.641
LCUP010259
Lucilia cuprina
LCUP010259
I
0.641
LDEC001249
Leptinotarsa decemlineata
LDEC001249
I
0.612
LDEC010767
Leptinotarsa decemlineata
LDEC010767
I
0.641
Sjc_0039470
Schistosoma japonicum
Sjc_0039470
I
0.661
Sjc_0051960
Schistosoma japonicum
Sjc_0051960
I
0.635
Sjc_0075360
Schistosoma japonicum
Sjc_0075360
I
0.674
SNAPOd2T00009387001
Oikopleura dioica
SNAPOd2T00009387001
I
0.636
SNAPOd2T00020544001
Oikopleura dioica
SNAPOd2T00020544001
I
0.635
nkx2-4
Xenopus tropicalis
XB-GENE-487481
I
0.761
AALB000327
Anopheles albimanus
AALB000327
I
0.641
AALB005001
Anopheles albimanus
AALB005001
I
0.612
AARA005138
Anopheles arabiensis
AARA005138
I
0.641
ACHR004287
Anopheles christyi
ACHR004287
I
0.641
ACOM031312
Anopheles coluzzii
ACOM031312
I
0.612
ACUA013183
Anopheles culicifacies
ACUA013183
I
0.612
ADIR006768
Anopheles dirus
ADIR006768
I
0.641
AEPI004828
Anopheles epiroticus
AEPI004828
I
0.641
AFUN001295
Anopheles funestus
AFUN001295
I
0.641
AFUN007609
Anopheles funestus
AFUN007609
I
0.612
AMAM009154
Anopheles maculatus
AMAM009154
I
0.641
AMEC011816
Anopheles melas
AMEC011816
I
0.641
AMEC016887
Anopheles melas
AMEC016887
I
0.641
AMIN005749
Anopheles minimus
AMIN005749
I
0.621
AMIN006279
Anopheles minimus
AMIN006279
I
0.641
AMIN011086
Anopheles minimus
AMIN011086
I
0.612
AQUA000678
Anopheles quadriannulatus
AQUA000678
I
0.641
ASTEI02548
Anopheles stephensi
ASTEI02548
I
0.612
BGLB001705
Biomphalaria glabrata
BGLB001705
I
0.641
BGLB005976
Biomphalaria glabrata
BGLB005976
I
0.635
A_07396
Schistosoma haematobium
A_07396
I
0.648
A_07699
Schistosoma haematobium
A_07699
I
0.635
ANCCEY_06024
Ancylostoma ceylanicum
ANCCEY_06024
I
0.612
ANCCEY_13939
Ancylostoma ceylanicum
ANCCEY_13939
I
0.635
ANCDUO_09759
Ancylostoma duodenale
ANCDUO_09759
I
0.641
augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0
I
0.667
CGOC_0000387301
Cylicostephanus goldi
CGOC_0000387301
I
0.641
csin105841
Clonorchis sinensis
csin105841
I
0.612
D915_08446
Fasciola hepatica
D915_08446
I
0.635
D918_03366
Trichuris suis
D918_03366
I
0.610
DILT_0000834901
Diphyllobothrium latum
DILT_0000834901
I
0.607
DILT_0001226501
Diphyllobothrium latum
DILT_0001226501
I
0.636
EVEC_0000238601
Enterobius vermicularis
EVEC_0000238601
I
0.634
genemark-nMf.1.1.scaf05885-processed-gene-0.2
Meloidogyne floridensis
genemark-nMf.1.1.scaf05885-processed-gene-0.2
I
0.599
GPLIN_000434400
Globodera pallida
GPLIN_000434400
I
0.635
GPLIN_000644800
Globodera pallida
GPLIN_000644800
I
0.609
GPLIN_001127900
Globodera pallida
GPLIN_001127900
I
0.642
Hba_14264
Heterorhabditis bacteriophora
Hba_14264
I
0.656
HPLM_0000640301
Haemonchus placei
HPLM_0000640301
I
0.635
HPLM_0001802901
Haemonchus placei
HPLM_0001802901
I
0.610
L893_g29073
Steinernema glaseri
L893_g29073
I
0.617
MhA1_Contig1070.frz3.gene23
Meloidogyne hapla
MhA1_Contig1070.frz3.gene23
I
0.615
MhA1_Contig290.frz3.gene10
Meloidogyne hapla
MhA1_Contig290.frz3.gene10
I
0.645
MhA1_Contig541.frz3.gene24
Meloidogyne hapla
MhA1_Contig541.frz3.gene24
I
0.612
nDi.2.2.2.g11780
Dirofilaria immitis
nDi.2.2.2.g11780
I
0.641
OESDEN_08182
Oesophagostomum dentatum
OESDEN_08182
I
0.635
OFLC_0001568201
Onchocerca flexuosa
OFLC_0001568201
I
0.637
PXEA_0000709901
Protopolystoma xenopodis
PXEA_0000709901
I
0.641
PXEA_0000830701
Protopolystoma xenopodis
PXEA_0000830701
I
0.667
SBAD_0000184901
Soboliphyme baturini
SBAD_0000184901
I
0.607
scaffold54-EXSNAP2012.70
Pristionchus exspectatus
scaffold54-EXSNAP2012.70
I
0.612
SCUD_0000012401
Schistosoma curassoni
SCUD_0000012401
I
0.635
SCUD_0001148701
Schistosoma curassoni
SCUD_0001148701
I
0.668
SMTD_0000630101
Schistosoma mattheei
SMTD_0000630101
I
0.649
SMTD_0001421101
Schistosoma mattheei
SMTD_0001421101
I
0.635
SROB_0000568701
Schistosoma rodhaini
SROB_0000568701
I
0.615
SROB_0000845601
Schistosoma rodhaini
SROB_0000845601
I
0.635
SROB_0001170301
Schistosoma rodhaini
SROB_0001170301
I
0.661
SSLN_0001021301
Schistocephalus solidus
SSLN_0001021301
I
0.636
SVUK_0000982701
Strongylus vulgaris
SVUK_0000982701
I
0.615
TCNE_0000805901
Toxocara canis
TCNE_0000805901
I
0.634
TELCIR_15720
Teladorsagia circumcincta
TELCIR_15720
I
0.635
TMUE_s0047002700
Trichuris muris
TMUE_s0047002700
I
0.608
TMUE_s0096002400
Trichuris muris
TMUE_s0096002400
I
0.603
TRE_0000552801
Trichobilharzia regenti
TRE_0000552801
I
0.674
TRE_0000840901
Trichobilharzia regenti
TRE_0000840901
I
0.615
ACEP14712
Atta cephalotes
ACEP14712
N
0.667
ACYPI007360
Acyrthosiphon pisum
ACYPI007360
N
0.701
ACYPI061631
Acyrthosiphon pisum
ACYPI061631
N
0.650
BGIBMGA000762
Bombyx mori
BGIBMGA000762
N
0.649
BGIOSGA032532
Oryza indica
BGIOSGA032532
N
0.612
CBG11788
Caenorhabditis briggsae
CBG11788
N
0.618
CBG27683
Caenorhabditis briggsae
CBG27683
N
0.617
CGI_10013606
Crassostrea gigas
CGI_10013606
N
0.631
ENSGMOG00000004079
Gadus morhua
ENSGMOG00000004079
N
0.670
ENSLOCG00000004278
Lepisosteus oculatus
ENSLOCG00000004278
N
0.624
ENSMEUG00000001401
Macropus eugenii
ENSMEUG00000001401
N
0.608
Rhox2h
Mus musculus
ENSMUSG00000079627
N
0.610
Rhox2f
Mus musculus
ENSMUSG00000095741
N
0.610
F775_52178
Aegilops tauschii
F775_52178
N
0.622
ISCW011755
Ixodes scapularis
ISCW011755
N
0.669
MESCA004913
Megaselia scalaris
MESCA004913
N
0.627
OBART10G02340
Oryza barthii
OBART10G02340
N
0.612
OGLUM10G02320
Oryza glumaepatula
OGLUM10G02320
N
0.606
ONIVA10G17960
Oryza nivara
ONIVA10G17960
N
0.612
Ppa-ceh-28
Pristionchus pacificus
PPA19627
N
0.649
SINV24463
Solenopsis invicta
SINV24463
N
0.700
SPU_019656
Strongylocentrotus purpuratus
SPU_019656
N
0.670
YQE_02582
Dendroctonus ponderosae
YQE_02582
N
0.667
Afo_R004423
Aptenodytes forsteri
Afo_R004423
N
0.637
Afo_R004424
Aptenodytes forsteri
Afo_R004424
N
0.670
Brh_R009090
Buceros rhinoceros
Brh_R009090
N
0.637
Brh_R009091
Buceros rhinoceros
Brh_R009091
N
0.670
Cmyd_10006636
Chelonia mydas
Cmyd_10006636
N
0.619
Cmyd_10006886
Chelonia mydas
Cmyd_10006886
N
0.622
Cmyd_10018206
Chelonia mydas
Cmyd_10018206
N
0.637
Gfo_R001742
Geospiza fortis
Gfo_R001742
N
0.637
Gfo_R001743
Geospiza fortis
Gfo_R001743
N
0.637
Hsal_00498--XP_394578.2_APIME
Harpegnathos saltator
Hsal_00498--XP_394578.2_APIME
N
0.649
Ogr05812
Ophisaurus gracilis
Ogr05812
N
0.667
Pvit_07422
Pogona vitticeps
Pvit_07422
N
0.622
Tal_R010536
Tyto alba
Tal_R010536
N
0.637
Tal_R010537
Tyto alba
Tal_R010537
N
0.670
e_gw.543.8.1
Branchiostoma floridae
e_gw.543.8.1
N
0.606
e_gw.543.9.1
Branchiostoma floridae
e_gw.543.9.1
N
0.690
e_gw.85.119.1
Branchiostoma floridae
e_gw.85.119.1
N
0.690
Ocbimv22011232m.g
Octopus bimaculoides
Ocbimv22011232m.g
N
0.602
CLEC007188
Cimex lectularius
CLEC007188
N
0.700
LDEC004800
Leptinotarsa decemlineata
LDEC004800
N
0.602
Sjc_0026350
Schistosoma japonicum
Sjc_0026350
N
0.667
Sjc_0057900
Schistosoma japonicum
Sjc_0057900
N
0.700
Sjc_0117080
Schistosoma japonicum
Sjc_0117080
N
0.616
AALB003620
Anopheles albimanus
AALB003620
N
0.700
AATE015248
Anopheles atroparvus
AATE015248
N
0.649
AFAF019448
Anopheles farauti
AFAF019448
N
0.649
AFUN010407
Anopheles funestus
AFUN010407
N
0.674
AMAM017394
Anopheles maculatus
AMAM017394
N
0.718
AMEM018396
Anopheles merus
AMEM018396
N
0.649
ASTEI04298
Anopheles stephensi
ASTEI04298
N
0.700
ACAC_0001096101
Angiostrongylus cantonensis
ACAC_0001096101
N
0.667
ACOC_0000018801
Angiostrongylus costaricensis
ACOC_0000018801
N
0.667
ANCCEY_11186
Ancylostoma ceylanicum
ANCCEY_11186
N
0.667
ANCDUO_22746
Ancylostoma duodenale
ANCDUO_22746
N
0.649
CGOC_0001416801
Cylicostephanus goldi
CGOC_0001416801
N
0.649
D915_05478
Fasciola hepatica
D915_05478
N
0.602
D915_09728
Fasciola hepatica
D915_09728
N
0.700
DILT_0000246201
Diphyllobothrium latum
DILT_0000246201
N
0.725
GPUH_0000280301
Gongylonema pulchrum
GPUH_0000280301
N
0.650
Hba_18080
Heterorhabditis bacteriophora
Hba_18080
N
0.692
HmN_000683200
Hymenolepis microstoma
HmN_000683200
N
0.619
HNAJ_0000742201
Hymenolepis nana
HNAJ_0000742201
N
0.636
HPLM_0001305101
Haemonchus placei
HPLM_0001305101
N
0.667
L892_g18619
Steinernema scapterisci
L892_g18619
N
0.741
L898_g16919
Steinernema monticolum
L898_g16919
N
0.634
MCOS_0000074401
Mesocestoides corti
MCOS_0000074401
N
0.661
MhA1_Contig1149.frz3.gene7
Meloidogyne hapla
MhA1_Contig1149.frz3.gene7
N
0.651
MhA1_Contig1424.frz3.gene2
Meloidogyne hapla
MhA1_Contig1424.frz3.gene2
N
0.602
NECAME_06897
Necator americanus
NECAME_06897
N
0.667
nRc.2.0.1.g41491
Romanomermis culicivorax
nRc.2.0.1.g41491
N
0.602
PXEA_0000454701
Protopolystoma xenopodis
PXEA_0000454701
N
0.649
PXEA_0002847001
Protopolystoma xenopodis
PXEA_0002847001
N
0.629
scaffold28-EXSNAP2012.55
Pristionchus exspectatus
scaffold28-EXSNAP2012.55
N
0.649
SMTD_0002268201
Schistosoma mattheei
SMTD_0002268201
N
0.667
SPER_0002786601
Spirometra erinaceieuropaei
SPER_0002786601
N
0.725
SPER_0003017401
Spirometra erinaceieuropaei
SPER_0003017401
N
0.725
SPER_0003264001
Spirometra erinaceieuropaei
SPER_0003264001
N
0.602
SPER_0003336701
Spirometra erinaceieuropaei
SPER_0003336701
N
0.602
SROB_0001175701
Schistosoma rodhaini
SROB_0001175701
N
0.607
TELCIR_03058
Teladorsagia circumcincta
TELCIR_03058
N
0.667
TELCIR_25656
Teladorsagia circumcincta
TELCIR_25656
N
0.667