ASU_12972 (Ascaris suum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ASU_12972 T233173_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.834 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.834 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.834 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.834 0.912
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.834 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.834 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.834 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.834 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.834 0.877
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.833 0.895
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.833 0.895
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.833 0.895
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.833 0.895
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.833 0.895
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.833 0.895
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.833 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.827 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ASU_12972 Homeodomain 175 231

Links

Other Homeodomain family TFs
Other Ascaris suum TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
tah-3 Neurospora crassa NCU03686 D 0.000
MBR_08762 Metarhizium brunneum MBR_08762 I 0.000
MBM_00232 Marssonina brunnea MBM_00232 I 0.000
MGG_11764 Magnaporthe oryzae MGG_11764 I 0.000
MGU_09012 Metarhizium guizhouense MGU_09012 I 0.000
NEUTE1DRAFT_93932 Neurospora tetrasperma NEUTE1DRAFT_93932 I 0.000
OIDMADRAFT_38504 Oidiodendron maius OIDMADRAFT_38504 I 0.000
S40285_00002 Stachybotrys chlorohalonata S40285_00002 I 0.000
S40288_05664 Stachybotrys chartarum S40288_05664 I 0.000
SBOR_2018 Sclerotinia borealis SBOR_2018 I 0.000
SMAC_02549 Sordaria macrospora SMAC_02549 I 0.000
SPBR_06805 Sporothrix brasiliensis SPBR_06805 I 0.000
SS1G_07003 Sclerotinia sclerotiorum SS1G_07003 I 0.000
TRIATDRAFT_133633 Trichoderma atroviride TRIATDRAFT_133633 I 0.000
UV8b_6280 Ustilaginoidea virens UV8b_6280 I 0.000
VDBG_09426 Verticillium alfalfae VDBG_09426 I 0.000
X797_003001 Metarhizium robertsii X797_003001 I 0.000
fgenesh2_pg.C_scaffold_1000308 Neurospora discreta fgenesh2_pg.C_scaffold_1000308 I 0.000
CPUR_07356 Claviceps purpurea CPUR_07356 I 0.000
ACRE_084480 Acremonium chrysogenum ACRE_084480 I 0.000
BBA_00861 Beauveria bassiana BBA_00861 I 0.000
Bcin10g03530 Botrytis cinerea Bcin10g03530 I 0.000
CCM_05638 Cordyceps militaris CCM_05638 I 0.000
CFIO01_10341 Colletotrichum fioriniae CFIO01_10341 I 0.000
CHGG_07320 Chaetomium globosum CHGG_07320 I 0.000
CMQ_6218 Grosmannia clavigera CMQ_6218 I 0.000
Cob_10342 Colletotrichum orbiculare Cob_10342 I 0.000
VDBG_09426 Verticillium albo atrum VDBG_09426 I 0.000
F503_07473 Ophiostoma piceae uamh F503_07473 I 0.000
GGTG_10494 Gaeumannomyces graminis GGTG_10494 I 0.000
HMPREF1624_00610 Sporothrix schenckii HMPREF1624_00610 I 0.000
M7I_6116 Glarea lozoyensis M7I_6116 I 0.000
MAJ_03096 Metarhizium majus MAJ_03096 I 0.000
MANI_006126 Metarhizium anisopliae MANI_006126 I 0.000
MAPG_09932 Magnaporthe poae MAPG_09932 I 0.000