L893_g20345 (Steinernema glaseri)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L893_g20345 T234854_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.828 0.786
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.817 0.786
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.787 0.804
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.787 0.804
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.787 0.804
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.779 0.768
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.779 0.768
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.779 0.768
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.779 0.768
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.779 0.768
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.779 0.768
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.778 0.750
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.778 0.750
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.778 0.750
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g20345.t1 Homeodomain 161 219

Links

Other Homeodomain family TFs
Other Steinernema glaseri TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CG43689 Drosophila melanogaster FBgn0263772 I 0.000
AFUN000252 Anopheles funestus AFUN000252 N 0.000
SINV15347 Solenopsis invicta SINV15347 N 0.000
tetur15g00740 Tetranychus urticae tetur15g00740 N 0.000
ENSBTAP00000004603-D1 Bos grunniens ENSBTAP00000004603-D1 N 0.000
Hsal_01303--XP_394358.3_APIME Harpegnathos saltator Hsal_01303--XP_394358.3_APIME N 0.000
LDEC007508 Leptinotarsa decemlineata LDEC007508 N 0.000
AARA002561 Anopheles arabiensis AARA002561 N 0.000
ACHR008455 Anopheles christyi ACHR008455 N 0.000
ADIR004650 Anopheles dirus ADIR004650 N 0.000
AEPI011200 Anopheles epiroticus AEPI011200 N 0.000
NV11201 Nasonia vitripennis NV11201 N 0.000
AMEC011182 Anopheles melas AMEC011182 N 0.000
AMEM010335 Anopheles merus AMEM010335 N 0.000
AMIN005800 Anopheles minimus AMIN005800 N 0.000
AQUA002448 Anopheles quadriannulatus AQUA002448 N 0.000
ASIS023610 Anopheles sinensis ASIS023610 N 0.000
ASTEI01189 Anopheles stephensi ASTEI01189 N 0.000
D917_04267 Trichinella nativa D917_04267 N 0.000
D918_01045 Trichuris suis D918_01045 N 0.000
TMUE_s0020007600 Trichuris muris TMUE_s0020007600 N 0.000
ENSOARG00000005304 Ovis aries ENSOARG00000005304 N 0.000
AAEL001230 Aedes aegypti AAEL001230 N 0.000
AGAP000875 Anopheles gambiae AGAP000875 N 0.000
CGI_10022679 Crassostrea gigas CGI_10022679 N 0.000
CPIJ011292 Culex quinquefasciatus CPIJ011292 N 0.000
ci-mytf Ciona intestinalis ENSCING00000007794 N 0.000
ST18 Callithrix jacchus ENSCJAG00000014630 N 0.000
ENSCSAVG00000009233 Ciona savignyi ENSCSAVG00000009233 N 0.000
ENSGMOG00000000679 Gadus morhua ENSGMOG00000000679 N 0.000
ENSMEUG00000001386 Macropus eugenii ENSMEUG00000001386 N 0.000
CpipJ_CPIJ011292 Culex pipiens CpipJ_CPIJ011292 N 0.000
ENSPMAG00000001124 Petromyzon marinus ENSPMAG00000001124 N 0.000
MYT1L Pteropus vampyrus ENSPVAG00000001625 N 0.000
MYT1L Tetraodon nigroviridis ENSTNIG00000008296 N 0.000
MYT1 Takifugu rubripes ENSTRUG00000002124 N 0.000
GF20773 Drosophila ananassae FBgn0097779 N 0.000
GK10260 Drosophila willistoni FBgn0212275 N 0.000
HMEL002385 Heliconius melpomene HMEL002385 N 0.000
MCINX013435 Melitaea cinxia MCINX013435 N 0.000