nRc.2.0.1.g04987 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g04987 T235505_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.855 0.965
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.855 0.965
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.855 0.965
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.855 0.965
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.855 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.855 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.855 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.855 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.855 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.853 0.947
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.853 0.947
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.853 0.947
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.853 0.947
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.853 0.947
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.853 0.947
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.853 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.847 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t04987-RA Homeodomain 179 235

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10012194 Chelonia mydas Cmyd_10012194 N 0.000
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N 0.000
Cmyd_10014022 Chelonia mydas Cmyd_10014022 N 0.000
Cmyd_10013937 Chelonia mydas Cmyd_10013937 N 0.000
Cmyd_10013772 Chelonia mydas Cmyd_10013772 N 0.000
Cmyd_10013718 Chelonia mydas Cmyd_10013718 N 0.000
Cmyd_10013406 Chelonia mydas Cmyd_10013406 N 0.000
Cmyd_10012972 Chelonia mydas Cmyd_10012972 N 0.000
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N 0.000
Cmyd_10012472 Chelonia mydas Cmyd_10012472 N 0.000
Cmyd_10012220 Chelonia mydas Cmyd_10012220 N 0.000
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N 0.000
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N 0.000
Cmyd_10012100 Chelonia mydas Cmyd_10012100 N 0.000
Cmyd_10012069 Chelonia mydas Cmyd_10012069 N 0.000
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N 0.000
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N 0.000
Cmyd_10011896 Chelonia mydas Cmyd_10011896 N 0.000
Cmyd_10011542 Chelonia mydas Cmyd_10011542 N 0.000
Cmyd_10011536 Chelonia mydas Cmyd_10011536 N 0.000
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N 0.000
Cmyd_10016810 Chelonia mydas Cmyd_10016810 N 0.000
Cmyd_10018053 Chelonia mydas Cmyd_10018053 N 0.000
Cmyd_10017985 Chelonia mydas Cmyd_10017985 N 0.000
Cmyd_10017938 Chelonia mydas Cmyd_10017938 N 0.000
Cmyd_10017906 Chelonia mydas Cmyd_10017906 N 0.000
Cmyd_10017310 Chelonia mydas Cmyd_10017310 N 0.000
Cmyd_10017203 Chelonia mydas Cmyd_10017203 N 0.000
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N 0.000
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N 0.000
Cmyd_10016912 Chelonia mydas Cmyd_10016912 N 0.000
Cmyd_10011070 Chelonia mydas Cmyd_10011070 N 0.000
Cmyd_10016549 Chelonia mydas Cmyd_10016549 N 0.000
Cmyd_10016498 Chelonia mydas Cmyd_10016498 N 0.000
Cmyd_10016076 Chelonia mydas Cmyd_10016076 N 0.000
Cmyd_10016005 Chelonia mydas Cmyd_10016005 N 0.000
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N 0.000
Cmyd_10014903 Chelonia mydas Cmyd_10014903 N 0.000
Cmyd_10014894 Chelonia mydas Cmyd_10014894 N 0.000
Cmyd_10014889 Chelonia mydas Cmyd_10014889 N 0.000
Cmyd_10014779 Chelonia mydas Cmyd_10014779 N 0.000
Cmyd_10004639 Chelonia mydas Cmyd_10004639 N 0.000
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N 0.000
Cmyd_10006722 Chelonia mydas Cmyd_10006722 N 0.000
Cmyd_10006667 Chelonia mydas Cmyd_10006667 N 0.000
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N 0.000
Cmyd_10006400 Chelonia mydas Cmyd_10006400 N 0.000
Cmyd_10006184 Chelonia mydas Cmyd_10006184 N 0.000
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N 0.000
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N 0.000
Cmyd_10004862 Chelonia mydas Cmyd_10004862 N 0.000
Cmyd_10007297 Chelonia mydas Cmyd_10007297 N 0.000
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N 0.000
Cmyd_10003938 Chelonia mydas Cmyd_10003938 N 0.000
Cmyd_10003577 Chelonia mydas Cmyd_10003577 N 0.000
Cmyd_10003504 Chelonia mydas Cmyd_10003504 N 0.000
Cmyd_10003439 Chelonia mydas Cmyd_10003439 N 0.000
Cmyd_10003172 Chelonia mydas Cmyd_10003172 N 0.000
Cmyd_10003126 Chelonia mydas Cmyd_10003126 N 0.000
Cmyd_10002130 Chelonia mydas Cmyd_10002130 N 0.000
Cmyd_10001989 Chelonia mydas Cmyd_10001989 N 0.000
Cmyd_10009235 Chelonia mydas Cmyd_10009235 N 0.000
Cmyd_10011031 Chelonia mydas Cmyd_10011031 N 0.000
Cmyd_10010768 Chelonia mydas Cmyd_10010768 N 0.000
Cmyd_10010344 Chelonia mydas Cmyd_10010344 N 0.000
Cmyd_10009827 Chelonia mydas Cmyd_10009827 N 0.000
Cmyd_10009643 Chelonia mydas Cmyd_10009643 N 0.000
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N 0.000
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N 0.000
Cmyd_10009310 Chelonia mydas Cmyd_10009310 N 0.000
Cmyd_10009304 Chelonia mydas Cmyd_10009304 N 0.000
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N 0.000
Cmyd_10009020 Chelonia mydas Cmyd_10009020 N 0.000
Cmyd_10008722 Chelonia mydas Cmyd_10008722 N 0.000
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N 0.000
Cmyd_10008649 Chelonia mydas Cmyd_10008649 N 0.000
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N 0.000
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N 0.000
Cmyd_10007900 Chelonia mydas Cmyd_10007900 N 0.000
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N 0.000
Cmyd_10007527 Chelonia mydas Cmyd_10007527 N 0.000